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[181942_at]

Description K02B12.4 /REP_DB=WormBase Gene ID /WP=CE06065 /TR=Q21116 /GB=CAB00034.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      4grp_high_8_8 > 41      6grp_total > 12      4grp_total > 54      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 340.6
(3)
P 		213.2
(0)
P 		145.4
(-1.5)
P 		81.7
(-3)
A 		259
B 352.8
(3)
P 		140.9
(-1.2)
P 		136.5
(-1.3)
P 		51.8
(-3)
A 		301
C 452.7
(3)
P 		157.2
(-1.6)
P 		143.3
(-1.9)
P 		70.1
(-3)
P 		383
avr 382
(3) 		170.4
(-1) 		141.7
(-1.6) 		67.9
(-3) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 323.2
(2)
P 		389.4
(3)
P 		203.5
(0.1)
P 		262.7
(1)
P 		163.4
(-0.6)
P 		9.7
(-3)
A 		380
B 283.2
(1.4)
P 		302.7
(1.8)
P 		248.9
(0.6)
P 		358.4
(3)
P 		143.6
(-1.7)
P 		81.9
(-3)
P 		277
C 311.3
(1.7)
P 		374.9
(3)
P 		298.5
(1.4)
P 		280.7
(1.1)
P 		217.6
(-0.2)
P 		80.7
(-3)
P 		294
avr 305.9
(2) 		355.7
(3) 		250.3
(0.9) 		300.6
(1.9) 		174.9
(-0.6) 		57.4
(-3) 		298
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 124
(3)
P 		46.3
(-1.2)
P 		38
(-1.6)
P 		12
(-3)
A 		112
B 112.5
(3)
P 		34.8
(-1.6)
P 		31.6
(-1.8)
P 		11
(-3)
A 		102
C 149.9
(3)
P 		45.2
(-1.5)
P 		50
(-1.3)
P 		11.8
(-3)
P 		138
avr 128.8
(3) 		42.1
(-1.4) 		39.9
(-1.6) 		11.6
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 59.6
(-0.5)
P 		138.5
(3)
P 		44.3
(-1.2)
P 		66.6
(-0.2)
P 		49.3
(-0.9)
P 		2.4
(-3)
A 		136
B 98.5
(2.8)
P 		100.8
(3)
P 		60.4
(-0.4)
P 		94.9
(2.5)
P 		58.4
(-0.6)
P 		30.5
(-3)
P 		70
C 115.4
(3)
P 		114.4
(2.9)
P 		76
(0.3)
P 		56.4
(-1)
P 		70.4
(-0.1)
P 		27
(-3)
P 		88
avr 91.2
(1.4) 		117.9
(3) 		60.2
(-0.5) 		72.6
(0.2) 		59.4
(-0.6) 		20
(-3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181942_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1632
Sequence Type Exemplar sequence
Representative Public ID K02B12.4 NCBI
Target Description K02B12.4 /REP_DB=WormBase Gene ID /WP=CE06065 /TR=Q21116 /GB=CAB00034.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059906(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059906 NCBI Caenorhabditis elegans K02B12.4 (K02B12.4) mRNA, complete cds. 9/11 None
GENEFINDER00000001153 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8523460:8525530:1 9/11 None
K02B12.4 ENSEMBL cdna:known chromosome:CEL140:I:8523451:8525334:1 gene:K02B12.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001144 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8523381-8525265(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02B12.4
Entrez Gene 186869 Entrez gene
SwissProt Q21116 EMBL-EBI
WormBase CE36181 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6979 response to oxidative stress inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4096 catalase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast ABA28304 AXL-1 [Caenorhabditis elegans] 0.0
blast CAB00034 Hypothetical protein K02B12.4 [Caenorhabditis elegans] ref|NP_492307.2| K02B12.4 [Caenorhabditis elegans] 1.0E-165
blast CAB00034 Hypothetical protein K02B12.4 [Caenorhabditis elegans] ref|NP_492307.2| K02B12.4 [Caenorhabditis elegans] 1.0E-163
blast ABA28304 AXL-1 [Caenorhabditis elegans] 1.0E-150
blast CAE67114 Hypothetical protein CBG12528 [Caenorhabditis briggsae] 1.0E-150
blast CAE67114 Hypothetical protein CBG12528 [Caenorhabditis briggsae] 1.0E-122
Sequence
Target Sequence 
>C. ELEGANS:181942_AT
tcgatggtaaacccccgtacatagacttatttgatcctctcaaacaaccacttttccaac
atttacggtcaatgcacactgaattttcaacgacaacagccgattgggaagatgcgtcat
caacaagttcttcaaataaaggtgctacaatatggttcaatgaagacgcaatcgataaat
catcccgccacgaaataggtcaaagtacagtaacccatgagtcggaagatgatcgatttt
cgtttttcaatgctgtctgtacacgccttaattccttacaaaagaaacgccaacaagttg
ccacatcagattccagcggattcggaagcaatgctagtgatttttggagttttgaacgtt
atggaaaatccaatcaaggaacacttgaaagaccaaatcgattatttacgggaacaaaca
acgggttttccacattacaaccaaagagaagaggttcagaggctccaaaaatgactgtag
aactacgatacgagaatgatgttccgatggtggcaaagatttcagcaaatcatgcacaat
ccgtcactttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATGGTAAACCCCCGTACATAGA 148 603 83 Antisense
TTGATCCTCTCAAACAACCACTTTT 180 705 113 Antisense
CACTTTTCCAACATTTACGGTCAAT 614 195 131 Antisense
GAATTTTCAACGACAACAGCCGATT 283 325 163 Antisense
ACAGCCGATTGGGAAGATGCGTCAT 267 109 178 Antisense
AAATCATCCCGCCACGAAATAGGTC 97 117 259 Antisense
TTCAATGCTGTCTGTACACGCCTTA 67 661 328 Antisense
TACACGCCTTAATTCCTTACAAAAG 265 639 342 Antisense
GAAACGCCAACAAGTTGCCACATCA 198 359 366 Antisense
TGCCACATCAGATTCCAGCGGATTC 639 585 381 Antisense
AATCATGCACAATCCGTCACTTTAA 420 171 610 Antisense
Sequence Source Affymetrix Proprietary Database