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[181941_s_at]

Description F37C4.5 /REP_DB=WormBase Gene ID /WP=CE17048 /TR=O44400 /GB=AAB95171.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 12      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 14      6grp_total > 33      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3074
1 2 3 4 range
A 3311.8
(1.7)
P 		3840.7
(3)
P 		3829
(3)
P 		1303.6
(-3)
P 		2537
B 3633.5
(1.9)
P 		3423.5
(1.5)
P 		4142.3
(3)
P 		1243.2
(-3)
P 		2899
C 3185.3
(2)
P 		3338.5
(2.3)
P 		3618.5
(3)
P 		1068.5
(-3)
P 		2550
avr 3376.9
(1.9) 		3534.2
(2.3) 		3863.3
(3) 		1205.1
(-3) 		2658

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4030
1 2 3 4 5 6 range
A 4983.5
(3)
P 		4082.7
(1)
P 		4436.2
(1.8)
P 		3503.9
(-0.2)
P 		2674.2
(-2)
P 		2222.4
(-3)
P 		2761
B 5121.7
(1.8)
P 		4148.8
(0.2)
P 		5875.9
(3)
P 		3646.6
(-0.6)
P 		2938.5
(-1.7)
P 		2133.6
(-3)
P 		3742
C 4880.4
(2.8)
P 		3836.4
(0.8)
P 		5011.1
(3)
P 		2731.7
(-1.3)
P 		3422.7
(-0)
P 		1846.1
(-3)
P 		3165
avr 4995.2
(2.8) 		4022.6
(0.9) 		5107.7
(3) 		3294.1
(-0.6) 		3011.8
(-1.1) 		2067.4
(-3) 		3040
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1081
1 2 3 4 range
A 1205.8
(3)
P 		833.7
(0.8)
P 		1001
(1.8)
P 		190.8
(-3)
P 		1015
B 1158.7
(3)
P 		845.5
(0.9)
P 		959.9
(1.7)
P 		264.9
(-3)
P 		894
C 1054.4
(1.9)
P 		959.8
(1.3)
P 		1261.2
(3)
P 		180.2
(-3)
P 		1081
avr 1139.6
(3) 		879.7
(1.3) 		1074
(2.6) 		212
(-3) 		928

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1268
1 2 3 4 5 6 range
A 918.7
(-0.5)
P 		1452
(3)
P 		966.1
(-0.2)
P 		888.7
(-0.7)
P 		806.9
(-1.2)
P 		541.1
(-3)
P 		911
B 1782.1
(3)
P 		1380.9
(0.6)
P 		1426.9
(0.8)
P 		965.9
(-2)
P 		1193.9
(-0.6)
P 		795.6
(-3)
P 		987
C 1809
(3)
P 		1170.6
(-0)
P 		1275.4
(0.5)
P 		549.4
(-3)
P 		1107.5
(-0.3)
P 		618
(-2.7)
P 		1260
avr 1503.3
(3) 		1334.5
(1.8) 		1222.8
(1) 		801.3
(-1.9) 		1036.1
(-0.3) 		651.6
(-3) 		852
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181941_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10606
Sequence Type Exemplar sequence
Representative Public ID F37C4.5 NCBI
Target Description F37C4.5 /REP_DB=WormBase Gene ID /WP=CE17048 /TR=O44400 /GB=AAB95171.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028014(11), NM_001028015(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028014 NCBI Caenorhabditis elegans F37C4.5a (F37C4.5) mRNA, complete cds. 11/11 None
NM_001028015 NCBI Caenorhabditis elegans F37C4.5b (F37C4.5) mRNA, complete cds. 11/11 None
SNAP00000038134 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3871925:3873795:-1 11/11 None
GENEFINDER00000038145 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3871925:3873795:-1 11/11 None
F37C4.5a.1 ENSEMBL cdna:known chromosome:CEL140:IV:3871721:3873800:-1 gene:F37C4.5 11/11 A 
F37C4.5a.2 ENSEMBL cdna:known chromosome:CEL140:IV:3871721:3873802:-1 gene:F37C4.5 11/11 A 
F37C4.5b ENSEMBL cdna:known chromosome:CEL140:IV:3871925:3872921:-1 gene:F37C4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3871930-3873801(-) 100.0 100.0
Public Domain and Genome References
Ensembl F37C4.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95171 Hypothetical protein F37C4.5a [Caenorhabditis elegans] ref|NP_001023185.1| F37C4.5a [Caenorhabditis elegans] sp|O44400|F37C4_CAEEL Protein F37C4.5 0.0
blast CAE65665 Hypothetical protein CBG10731 [Caenorhabditis briggsae] 0.0
blast CAE65666 Hypothetical protein CBG10732 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181941_S_AT
cgacgatcgcaccgacgagtacaaggtgaacatcggacaattcacactcgacaccaagct
ctccaacgttaccgtcccatcccgtaacgccaccgcgttcctcgtcgccaactcggtcaa
cacctccgactacccactcgtcgccggtcaggcatcgatcttcctcgacggagcattcgt
caacaagaccgagttcgaagatgcggtcgtatcgcaaaagtttgaggtgtcgttgggcgt
cgacccgaacatccgcatcgagtacaagcctgtcagaaactaccaggaacagagcggaac
cgtcgagaagatcaactctcaggtcaccgagaagaccactgccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACGATCGCACCGACGAGTACAAG 145 251 1068 Antisense
CATCGGACAATTCACACTCGACACC 201 213 1098 Antisense
GATCTTCCTCGACGGAGCATTCGTC 527 419 1224 Antisense
GCATTCGTCAACAAGACCGAGTTCG 518 307 1240 Antisense
GAGTTCGAAGATGCGGTCGTATCGC 190 397 1258 Antisense
TTGAGGTGTCGTTGGGCGTCGACCC 662 689 1289 Antisense
GAACATCCGCATCGAGTACAAGCCT 377 351 1314 Antisense
GTACAAGCCTGTCAGAAACTACCAG 510 459 1329 Antisense
TACCAGGAACAGAGCGGAACCGTCG 377 643 1348 Antisense
GAAGATCAACTCTCAGGTCACCGAG 36 339 1374 Antisense
AGGTCACCGAGAAGACCACTGCCGT 638 57 1388 Antisense
Sequence Source Affymetrix Proprietary Database