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[181940_at]

Description T24H7.3 /REP_DB=WormBase Gene ID /WP=CE02885 /TR=Q22757 /GB=AAA68351.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 74      6grp_total > 64      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 317
1 2 3 4 range
A 538.2
(-2.4)
P 		731.4
(2)
P 		774.7
(3)
P 		513.6
(-3)
P 		261
B 642.1
(-1.3)
P 		753.6
(1.2)
P 		831
(3)
P 		567
(-3)
P 		264
C 598.3
(-2.6)
P 		742.7
(1.1)
P 		817.8
(3)
P 		581.8
(-3)
P 		236
avr 592.9
(-2.1) 		742.6
(1.5) 		807.8
(3) 		554.1
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 547
1 2 3 4 5 6 range
A 413.4
(-3)
P 		722.6
(2.5)
P 		731.4
(2.6)
P 		740.2
(2.8)
P 		563.6
(-0.4)
P 		753.6
(3)
P 		340
B 412.7
(-3)
P 		636.7
(0.8)
P 		766.5
(3)
P 		593.6
(0.1)
P 		662.7
(1.2)
P 		697.7
(1.8)
P 		354
C 570
(-3)
P 		613.6
(-2.3)
P 		960
(3)
P 		661.3
(-1.6)
P 		725.7
(-0.6)
P 		761.6
(-0.1)
P 		390
avr 465.4
(-3) 		657.6
(0.3) 		819.3
(3) 		665
(0.4) 		650.7
(0.1) 		737.6
(1.6) 		354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 195.9
(2.7)
P 		158.8
(0.9)
P 		202.5
(3)
P 		75.2
(-3)
P 		127
B 204.8
(3)
P 		186.1
(1.7)
P 		192.6
(2.1)
P 		120.8
(-3)
P 		84
C 198.1
(0.2)
P 		213.5
(0.7)
P 		285
(3)
P 		98.1
(-3)
P 		187
avr 199.6
(1.7) 		186.1
(1.1) 		226.7
(3) 		98
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 76.2
(-3)
P 		257
(3)
P 		159.3
(-0.2)
P 		187.7
(0.7)
P 		170.1
(0.1)
P 		183.5
(0.6)
P 		181
B 143.6
(-3)
P 		211.9
(0.3)
P 		186.1
(-1)
P 		157.2
(-2.4)
P 		269.3
(3)
P 		260.2
(2.6)
P 		126
C 211.3
(0.9)
P 		187.2
(-0.3)
P 		244.3
(2.5)
P 		133
(-3)
P 		234.8
(2)
P 		254.9
(3)
P 		122
avr 143.7
(-3) 		218.7
(2) 		196.6
(0.6) 		159.3
(-2) 		224.7
(2.4) 		232.9
(3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181940_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5088
Sequence Type Exemplar sequence
Representative Public ID T24H7.3 NCBI
Target Description T24H7.3 /REP_DB=WormBase Gene ID /WP=CE02885 /TR=Q22757 /GB=AAA68351.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062847(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062847 NCBI Caenorhabditis elegans T24H7.3 (T24H7.3) mRNA, complete cds. 11/11 None
SNAP00000031000 ENSEMBL cdna:SNAP chromosome:CEL140:II:6246315:6246925:1 11/11 None
GENEFINDER00000031003 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6246315:6246925:1 11/11 None
T24H7.3.1 ENSEMBL cdna:known chromosome:CEL140:II:6246306:6247153:1 gene:T24H7.3 11/11 None
T24H7.3.2 ENSEMBL cdna:known chromosome:CEL140:II:6246313:6247149:1 gene:T24H7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6246311-6246922(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24H7.3
Entrez Gene 174032 Entrez gene
SwissProt Q22757 EMBL-EBI
WormBase CE02885 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68351 Hypothetical protein T24H7.3 [Caenorhabditis elegans] ref|NP_495248.1| T24H7.3 [Caenorhabditis elegans] 4.0E-66
blast CAE59271 Hypothetical protein CBG02603 [Caenorhabditis briggsae] 4.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR007967 EMBL-EBI Protein of unknown function DUF727 1.1E-78
Sequence
Target Sequence 
>C. ELEGANS:181940_AT
atctgacaaagatgcctctgtgagcgagacgacgactccaccaacaactcctgttactgt
caaaaagccggcgctttgtggaagttgtgattgtgatgtggagaagtccacccttgagga
agaagcaatggcagctgttcgtgaaaatgcatttgcagtcaacttgattggtgtaagcga
aatgcttccacgtacttcacaacttctcttcattaatgtaactacattcgagaatcacac
tcattgtatcgagctcactcaaaagggatggcgagttgcatcaaatcgcaatgactgcat
gaatggtgatttccgacaactcgatattcatacaaagtatttcgagtcactccatacgct
tcttatggatatttcgccacttttccgtgagacattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGACAAAGATGCCTCTGTGAGC 412 33 24 Antisense
TCTGTGAGCGAGACGACGACTCCAC 696 607 40 Antisense
TGTTACTGTCAAAAAGCCGGCGCTT 200 561 75 Antisense
GGAGAAGTCCACCCTTGAGGAAGAA 260 519 123 Antisense
GCAATGGCAGCTGTTCGTGAAAATG 138 321 148 Antisense
ACTTCACAACTTCTCTTCATTAATG 179 103 217 Antisense
CACTCATTGTATCGAGCTCACTCAA 614 197 261 Antisense
GAATGGTGATTTCCGACAACTCGAT 261 333 324 Antisense
GTATTTCGAGTCACTCCATACGCTT 564 451 360 Antisense
ATACGCTTCTTATGGATATTTCGCC 472 23 377 Antisense
TCGCCACTTTTCCGTGAGACATTCG 244 599 397 Antisense
Sequence Source Affymetrix Proprietary Database