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[181938_at]

Description T19B4.2 /REP_DB=WormBase Gene ID /WP=CE13738 /TR=P91457 /GB=AAB37636.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 34      6grp_total > 37      4grp_total > 45      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 304.6
(3)
P 		261
(1.3)
A 		216.1
(-0.5)
P 		154.7
(-3)
P 		150
B 362.8
(3)
P 		212.5
(-1.6)
A 		167.4
(-3)
P 		223.6
(-1.3)
P 		195
C 252.6
(3)
P 		251.9
(2.9)
P 		182.8
(-2.2)
P 		172.8
(-3)
A 		80
avr 306.7
(3) 		241.8
(-0.2) 		188.8
(-2.8) 		183.7
(-3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 203.9
(2.7)
A 		184.8
(1.7)
P 		98.9
(-3)
A 		116.7
(-2)
A 		126.5
(-1.5)
A 		209.1
(3)
A 		110
B 235.4
(3)
P 		212.4
(2.2)
P 		111.7
(-1)
M 		51.8
(-3)
A 		70.3
(-2.4)
A 		179.6
(1.2)
A 		184
C 307.5
(3)
P 		177.2
(-0.9)
A 		177.8
(-0.9)
P 		105.6
(-3)
A 		129.5
(-2.3)
A 		178.5
(-0.8)
A 		202
avr 248.9
(3) 		191.5
(0.8) 		129.5
(-1.5) 		91.4
(-3) 		108.8
(-2.3) 		189.1
(0.7) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 110.9
(3)
P 		56.7
(-0.7)
A 		56.5
(-0.7)
P 		22.7
(-3)
P 		88
B 115.7
(3)
P 		52.5
(-1.9)
A 		38.8
(-3)
P 		47.7
(-2.3)
P 		77
C 83.6
(3)
P 		72.4
(1.8)
P 		63.7
(0.8)
P 		29.1
(-3)
A 		55
avr 103.4
(3) 		60.5
(-0.7) 		53
(-1.3) 		33.2
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 37.6
(-0.8)
A 		65.7
(3)
P 		21.5
(-3)
A 		29.6
(-1.9)
A 		38.2
(-0.7)
A 		50.9
(1)
A 		44
B 81.9
(3)
P 		70.7
(2)
P 		27.1
(-1.8)
M 		13.7
(-3)
A 		28.6
(-1.7)
A 		67
(1.7)
A 		68
C 114
(3)
P 		54.1
(-0.9)
A 		45.2
(-1.4)
P 		21.2
(-3)
A 		41.9
(-1.7)
A 		59.8
(-0.5)
A 		93
avr 77.8
(3) 		63.5
(1.5) 		31.3
(-2) 		21.5
(-3) 		36.2
(-1.4) 		59.2
(1) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181938_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1629
Sequence Type Exemplar sequence
Representative Public ID T19B4.2 NCBI
Target Description T19B4.2 /REP_DB=WormBase Gene ID /WP=CE13738 /TR=P91457 /GB=AAB37636.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059264(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059264 NCBI Caenorhabditis elegans Nuclear Pore complex Protein family member (npp-7) (npp-7) mRNA, complete cds. 11/11 None
SNAP00000019540 ENSEMBL cdna:SNAP chromosome:CEL140:I:5692269:5696691:1 11/11 None
GENEFINDER00000019548 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5692269:5696691:1 11/11 None
T19B4.2 ENSEMBL cdna:known chromosome:CEL140:I:5691841:5697505:1 gene:T19B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5692268-5696691(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol npp-7
Ensembl T19B4.2
Entrez Gene 172234 Entrez gene
SwissProt P91457 EMBL-EBI
WormBase CE13738 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37636 Nuclear pore complex protein protein 7 [Caenorhabditis elegans] ref|NP_491665.1| Nuclear Pore complex Protein family member (npp-7) [Caenorhabditis elegans] 0.0
blast CAE68938 Hypothetical protein CBG14918 [Caenorhabditis briggsae] 0.0
blast AAO52512 similar to Streptococcus pneumoniae. Cell wall surface anchor family protein [Dictyostelium discoideum] 5.0E-18
Sequence
Target Sequence 
>C. ELEGANS:181938_AT
tctactgcctcaaccacaagtggatcactctttggcggtgcttctacaaatccaccaatg
ttcggagggccttcatcctcaagcattcccgcattttcgacatcaaactcttcaagcact
tcaggttttcctagctctacagcgaccccattcggaaacgccgggacaacatcaacctct
ggagtgtttggtgcatttggaaacaagccatcacaaccaggattgtcttctagctcatct
acgaactcgttgttcggtcaagcacctgctgattcctctaacccgttcggtggcacgtcc
aataatggcttcaactttggtgcatctagcagcacaaccggcgccactgcaggaggcgga
ggagttttccagtttggaaatgctgccacctcagctccagctccgactgctgctccagga
ggtggagcgttccagtttggtggtaacatgtcagttccacaagctccagcacctggtgga
atggaaaacgccttttcttatcaagctccgagtggtgtcggcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACTGCCTCAACCACAAGTGGAT 133 613 3100 Antisense
CAAGTGGATCACTCTTTGGCGGTGC 705 181 3116 Antisense
ATCCACCAATGTTCGGAGGGCCTTC 606 37 3149 Antisense
CCCGCATTTTCGACATCAAACTCTT 420 261 3187 Antisense
AGCACTTCAGGTTTTCCTAGCTCTA 38 73 3214 Antisense
GGGACAACATCAACCTCTGGAGTGT 419 493 3262 Antisense
CAACCAGGATTGTCTTCTAGCTCAT 356 187 3313 Antisense
GTAACATGTCAGTTCCACAAGCTCC 705 461 3542 Antisense
CCACAAGCTCCAGCACCTGGTGGAA 34 275 3556 Antisense
GAAAACGCCTTTTCTTATCAAGCTC 148 355 3583 Antisense
ATCAAGCTCCGAGTGGTGTCGGCGC 630 25 3599 Antisense
Sequence Source Affymetrix Proprietary Database