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[181937_s_at]

Description F27C1.2 /REP_DB=WormBase Gene ID /WP=CE09715 /TR=P91284 /GB=AAB37655.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 60      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 36      6grp_total > 70      4grp_total > 04      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7268
1 2 3 4 range
A 4313.7
(-1)
P 		2476.7
(-2.9)
P 		2386.3
(-3)
P 		8303.2
(3)
P 		5917
B 4224.5
(-1.4)
P 		2799.7
(-2.6)
P 		2318.9
(-3)
P 		9571.8
(3)
P 		7253
C 4149.6
(-1.1)
P 		2979.4
(-2.3)
P 		2303.8
(-3)
P 		8072
(3)
P 		5768
avr 4229.3
(-1.2) 		2751.9
(-2.6) 		2336.3
(-3) 		8649
(3) 		6313

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2269
1 2 3 4 5 6 range
A 3541.2
(-2.3)
P 		3419.4
(-3)
P 		3526.9
(-2.4)
P 		4443.1
(3)
P 		4143.9
(1.2)
P 		3543.6
(-2.3)
P 		1024
B 4482.4
(1.1)
P 		3805.1
(-2.2)
P 		4884.9
(3)
P 		4805.2
(2.6)
P 		3834.2
(-2)
P 		3634.8
(-3)
P 		1250
C 4271.5
(-1.3)
P 		3707.1
(-3)
P 		4237
(-1.4)
P 		5687.9
(3)
P 		3773.9
(-2.8)
P 		3734.6
(-2.9)
P 		1981
avr 4098.4
(-0.9) 		3643.9
(-3) 		4216.3
(-0.4) 		4978.7
(3) 		3917.3
(-1.7) 		3637.7
(-3) 		1341
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1503
1 2 3 4 range
A 1570.6
(3)
P 		537.6
(-3)
P 		623.8
(-2.5)
P 		1215.4
(0.9)
P 		1033
B 1347.2
(0.2)
P 		691.5
(-2.4)
P 		537.3
(-3)
P 		2039.8
(3)
P 		1503
C 1373.6
(3)
P 		856.6
(-2.4)
P 		803
(-3)
P 		1361.1
(2.9)
P 		571
avr 1430.5
(2.3) 		695.2
(-2.7) 		654.7
(-3) 		1538.8
(3) 		884

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 930
1 2 3 4 5 6 range
A 652.8
(-3)
P 		1216.1
(2.7)
P 		768.1
(-1.8)
P 		1126.9
(1.8)
P 		1250.4
(3)
P 		862.8
(-0.9)
P 		598
B 1559.6
(3)
P 		1266.6
(-1.7)
P 		1186.2
(-3)
P 		1272.7
(-1.6)
P 		1557.8
(3)
P 		1355.4
(-0.3)
P 		373
C 1583.2
(3)
P 		1131.2
(-2.4)
P 		1078.4
(-3)
P 		1143.9
(-2.2)
P 		1221.2
(-1.3)
P 		1250.2
(-1)
P 		505
avr 1265.2
(1.6) 		1204.6
(0.5) 		1010.9
(-3) 		1181.2
(0.1) 		1343.1
(3) 		1156.1
(-0.4) 		332
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181937_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1527
Sequence Type Exemplar sequence
Representative Public ID F27C1.2 NCBI
Target Description F27C1.2 /REP_DB=WormBase Gene ID /WP=CE09715 /TR=P91284 /GB=AAB37655.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026247(11), NM_001026248(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026247 NCBI Caenorhabditis elegans F27C1.2a (F27C1.2) mRNA, complete cds. 11/11 None
NM_001026248 NCBI Caenorhabditis elegans F27C1.2b (F27C1.2) mRNA, complete cds. 11/11 None
SNAP00000014504 ENSEMBL cdna:SNAP chromosome:CEL140:I:5430170:5431158:1 11/11 None
GENEFINDER00000014520 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5430170:5431158:1 11/11 None
F27C1.2a.2 ENSEMBL cdna:known chromosome:CEL140:I:5430161:5431158:1 gene:F27C1.2 11/11 None
F27C1.2a.1 ENSEMBL cdna:known chromosome:CEL140:I:5430167:5431423:1 gene:F27C1.2 11/11 None
F27C1.2b ENSEMBL cdna:known chromosome:CEL140:I:5430167:5431452:1 gene:F27C1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5430169-5431158(+) 100.0 100.0
Public Domain and Genome References
Ensembl F27C1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT68894 Hypothetical protein F27C1.2b [Caenorhabditis elegans] ref|NP_001021419.1| F27C1.2b [Caenorhabditis elegans] 1.0E-122
blast AAB37655 Hypothetical protein F27C1.2a [Caenorhabditis elegans] ref|NP_001021418.1| F27C1.2a [Caenorhabditis elegans] 1.0E-120
blast AAT68894 Hypothetical protein F27C1.2b [Caenorhabditis elegans] ref|NP_001021419.1| F27C1.2b [Caenorhabditis elegans] 1.0E-118
blast AAB37655 Hypothetical protein F27C1.2a [Caenorhabditis elegans] ref|NP_001021418.1| F27C1.2a [Caenorhabditis elegans] 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR007274 EMBL-EBI Ctr copper transporter 1.1E-71
Pfam IPR007274 EMBL-EBI Ctr copper transporter 3.8E-67
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021418.1 4 7-29,99-121,188-210,214-233
NP_001021419.1 4 7-29,99-121,192-214,218-237
F27C1.2a.2 4 7-29,99-121,188-210,214-233
F27C1.2a.1 4 7-29,99-121,188-210,214-233
F27C1.2b 4 7-29,99-121,192-214,218-237
SNAP00000014504 4 7-29,99-121,188-210,214-233
GENEFINDER00000014520 4 7-29,99-121,188-210,214-233
Sequence
Target Sequence 
>C. ELEGANS:181937_S_AT
tcgtctcatggatcacacgcaggtcatggtggacacgagggacatatgatgaaaatgtgg
ttccatggaggatttgaagaagttattctattcgatttttggaggacggattcacttttc
ggtatgcttttatcgtgtgctgctattttcattatgggcgccacatatgaaggtgtcaag
tggttccgtgtatttctgcaaatgacgcaaacacaagctcaggttcttgccaacaaatca
tgcgtggagacaacgcggtcttctggaggcacttgccatcaatcggttacccactcacag
agcaacaagcctcaatctgaaccgttcctgatatcggcttcggtagcgaggacccctgca
acttcgccattctctcctcaacggctcattcagatgctcttgtacatttttcaattggtg
ctcgcctattggctcatgctcattgtgatgacttacaacacttatctaactgctgcggtg
gtattaggagcaggatttggacattggctgtttgcagttctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCTCATGGATCACACGCAGGTC 105 599 190 Antisense
AGGACGGATTCACTTTTCGGTATGC 413 55 292 Antisense
GGTATGCTTTTATCGTGTGCTGCTA 701 503 310 Antisense
GTGCTGCTATTTTCATTATGGGCGC 695 477 326 Antisense
AGTGGTTCCGTGTATTTCTGCAAAT 229 59 368 Antisense
GCAACAAGCCTCAATCTGAACCGTT 484 317 491 Antisense
GAACCGTTCCTGATATCGGCTTCGG 84 329 508 Antisense
CAACGGCTCATTCAGATGCTCTTGT 556 187 568 Antisense
ACATTTTTCAATTGGTGCTCGCCTA 607 105 593 Antisense
GCCTATTGGCTCATGCTCATTGTGA 667 281 613 Antisense
GACATTGGCTGTTTGCAGTTCTCCA 440 371 689 Antisense
Sequence Source Affymetrix Proprietary Database