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[181936_at]

Description C17D12.7 /REP_DB=WormBase Gene ID /WP=CE23554 /TR=O62071 /GB=CAB03895.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 49      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 30.1
(-2.5)
A 		88.3
(2.1)
A 		99.1
(3)
A 		24.5
(-3)
A 		75
B 14.4
(-3)
A 		75.3
(3)
A 		66.2
(2.1)
A 		70.7
(2.5)
A 		61
C 21.8
(-2.9)
A 		90.2
(3)
A 		88.4
(2.8)
A 		20.8
(-3)
A 		69
avr 22.1
(-3) 		84.6
(3) 		84.6
(3) 		38.7
(-1.4) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 129.9
(3)
A 		57.5
(-0.6)
A 		7.7
(-3)
A 		62.6
(-0.3)
A 		49.2
(-1)
A 		36.5
(-1.6)
A 		122
B 23.9
(-2.2)
A 		93.3
(3)
A 		82.9
(2.2)
A 		37.8
(-1.1)
A 		12.9
(-3)
A 		58.5
(0.4)
A 		80
C 48.6
(-0)
A 		15.5
(-3)
A 		81.8
(3)
A 		18.7
(-2.7)
A 		43.4
(-0.5)
A 		58.4
(0.9)
A 		66
avr 67.5
(3) 		55.4
(0.8) 		57.5
(1.1) 		39.7
(-2.2) 		35.2
(-3) 		51.1
(-0) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 11
(-1)
A 		19.2
(1.2)
A 		25.9
(3)
A 		3.6
(-3)
A 		22
B 4.6
(-3)
A 		18.6
(3)
A 		15.3
(1.6)
A 		15.1
(1.5)
A 		14
C 7.2
(-2.2)
A 		25.9
(1.9)
A 		30.8
(3)
A 		3.5
(-3)
A 		27
avr 7.6
(-2.9) 		21.2
(2) 		24
(3) 		7.4
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 23.9
(3)
A 		20.5
(2.1)
A 		1.7
(-3)
A 		15.9
(0.8)
A 		14.9
(0.6)
A 		8.9
(-1.1)
A 		22
B 8.3
(-2.3)
A 		31
(3)
A 		20.1
(0.5)
A 		10
(-1.9)
A 		5.2
(-3)
A 		21.8
(0.9)
A 		26
C 18
(2)
A 		4.7
(-2.7)
A 		20.8
(3)
A 		3.8
(-3)
A 		14
(0.6)
A 		19.5
(2.5)
A 		17
avr 16.7
(1.6) 		18.7
(3) 		14.2
(-0.1) 		9.9
(-3) 		11.4
(-2) 		16.7
(1.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181936_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1520
Sequence Type Exemplar sequence
Representative Public ID C17D12.7 NCBI
Target Description C17D12.7 /REP_DB=WormBase Gene ID /WP=CE23554 /TR=O62071 /GB=CAB03895.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060558(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060558 NCBI Caenorhabditis elegans C17D12.7 (C17D12.7) mRNA, complete cds. 11/11 None
SNAP00000011115 ENSEMBL cdna:SNAP chromosome:CEL140:I:11610317:11628084:-1 11/11 None
GENEFINDER00000011123 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11612733:11619423:-1 11/11 None
C17D12.7 ENSEMBL cdna:known chromosome:CEL140:I:11612733:11619423:-1 gene:C17D12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11612663-11619354(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17D12.7
Entrez Gene 173044 Entrez gene
SwissProt O62071 EMBL-EBI
WormBase CE23554 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03895 Hypothetical protein C17D12.7 [Caenorhabditis elegans] ref|NP_492959.1| C17D12.7 [Caenorhabditis elegans] 0.0
blast CAB03891 Hypothetical protein C17D12.3 [Caenorhabditis elegans] ref|NP_492962.1| C17D12.3 [Caenorhabditis elegans] 1.0E-168
blast CAA21046 Hypothetical protein Y47H9A.1 [Caenorhabditis elegans] emb|CAB03899.2| Hypothetical protein Y47H9A.1 [Caenorhabditis elegans] ref|NP_492963.1| Y47H9A.1 [Caenorhabditis elegans] 1.0E-167
blast CAE69586 Hypothetical protein CBG15805 [Caenorhabditis briggsae] 2.0E-58
blast CAE69586 Hypothetical protein CBG15805 [Caenorhabditis briggsae] 8.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.5E-37
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 7.9E-39
Sequence
Target Sequence 
>C. ELEGANS:181936_AT
tcatggctcaaaacccgttcagcgacgtcccacagtaccaaaagcttcaaaaactggctc
cgatcgtccgacaactgcttcaacggcgaaaattgtggaaaaacctgaaattccggtgga
aattcctcaaaaattggaaatttctcggaaaattgcggaaaaaactctgaaattggacga
ttttccagtgaaaagttcaaatttttcaaatatttcaaattttcaaccgcgccggccacc
atactgtagtgccacgtcatcagatggctccgcccattccttggctacagtaacccagca
actcatgggaacagttaaacttttgcatccggattggcttgatatgctccgtcgactact
gaataatgctctgccacgtgatgacgtcactcttttgttcaaatatcaagttttggcgga
aaaagatcatttggaacggaaatttcgtggaaatctatctgtggaagctgaagctgctga
tgctcacttggagcattttgggcggatttcgacgctgaatcgtgtgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGGCTCAAAACCCGTTCAGCGA 78 623 1368 Antisense
CGTCCCACAGTACCAAAAGCTTCAA 72 247 1393 Antisense
GCTTCAAAAACTGGCTCCGATCGTC 557 303 1411 Antisense
GTCCGACAACTGCTTCAACGGCGAA 648 471 1433 Antisense
ACCATACTGTAGTGCCACGTCATCA 456 87 1605 Antisense
GCCCATTCCTTGGCTACAGTAACCC 338 287 1639 Antisense
AAACTTTTGCATCCGGATTGGCTTG 48 127 1684 Antisense
TGATATGCTCCGTCGACTACTGAAT 347 563 1707 Antisense
TAATGCTCTGCCACGTGATGACGTC 648 635 1731 Antisense
TGGAGCATTTTGGGCGGATTTCGAC 495 547 1856 Antisense
GATTTCGACGCTGAATCGTGTGCTC 107 429 1872 Antisense
Sequence Source Affymetrix Proprietary Database