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[181935_s_at]

Description C14C10.3 /REP_DB=WormBase Gene ID /WP=CE05282 /TR=Q17973 /GB=CAA98427.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 55      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 76      6grp_total > 65      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5146
1 2 3 4 range
A 1373.2
(-1.5)
P 		328.2
(-3)
P 		388
(-2.9)
P 		4374.5
(3)
P 		4046
B 1073.7
(-2.2)
P 		347.4
(-3)
P 		489
(-2.8)
P 		5474.5
(3)
P 		5127
C 1235.4
(-1.6)
P 		393.4
(-3)
P 		537.1
(-2.8)
P 		3976.4
(3)
P 		3583
avr 1227.4
(-1.8) 		356.3
(-3) 		471.4
(-2.8) 		4608.5
(3) 		4252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 788
1 2 3 4 5 6 range
A 1012.7
(-1.7)
P 		1311.9
(1)
P 		919.8
(-2.5)
P 		1540.9
(3)
P 		863.1
(-3)
P 		1532.9
(2.9)
P 		678
B 1056.9
(1.3)
P 		1007.5
(0.6)
P 		1075.7
(1.6)
P 		1177.4
(3)
P 		752.6
(-3)
P 		1170.5
(2.9)
P 		425
C 1369
(2.3)
P 		1096.4
(-1.5)
P 		1342.3
(1.9)
P 		1421
(3)
P 		987.9
(-3)
P 		1273.2
(1)
P 		433
avr 1146.2
(0.3) 		1138.6
(0.2) 		1112.6
(-0.1) 		1379.8
(3) 		867.9
(-3) 		1325.5
(2.4) 		512
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1095
1 2 3 4 range
A 500
(1.5)
P 		71.2
(-3)
P 		101.4
(-2.7)
P 		640.3
(3)
P 		569
B 342.4
(-1.6)
P 		85.8
(-3)
P 		113.3
(-2.8)
P 		1166.6
(3)
P 		1081
C 409
(0.2)
P 		113.1
(-3)
P 		187.2
(-2.2)
P 		670.5
(3)
P 		557
avr 417.1
(-0.3) 		90
(-3) 		134
(-2.6) 		825.8
(3) 		736

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 186.7
(-3)
P 		466.6
(3)
P 		200.3
(-2.7)
P 		390.8
(1.4)
P 		260.5
(-1.4)
P 		373.2
(1)
P 		280
B 367.7
(0.6)
P 		335.4
(-0.5)
P 		261.2
(-3)
P 		311.9
(-1.3)
P 		305.8
(-1.5)
P 		436.5
(3)
P 		175
C 507.4
(3)
P 		334.5
(-1.7)
P 		341.6
(-1.5)
P 		285.8
(-3)
P 		319.7
(-2.1)
P 		426.2
(0.8)
P 		222
avr 353.9
(0.6) 		378.8
(1.6) 		267.7
(-3) 		329.5
(-0.4) 		295.3
(-1.9) 		412
(3) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181935_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12637
Sequence Type Exemplar sequence
Representative Public ID C14C10.3 NCBI
Target Description C14C10.3 /REP_DB=WormBase Gene ID /WP=CE05282 /TR=Q17973 /GB=CAA98427.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028487(11), NM_001028488(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028487 NCBI Caenorhabditis elegans C14C10.3a (C14C10.3) mRNA, complete cds. 11/11 None
NM_001028488 NCBI Caenorhabditis elegans C14C10.3b (C14C10.3) mRNA, complete cds. 11/11 None
SNAP00000017652 ENSEMBL cdna:SNAP chromosome:CEL140:V:12599138:12601668:-1 11/11 None
GENEFINDER00000017660 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12599138:12601668:-1 11/11 None
C14C10.3.1 ENSEMBL cdna:known chromosome:CEL140:V:12598989:12601740:-1 gene:C14C10.3 11/11 None
C14C10.3.2 ENSEMBL cdna:known chromosome:CEL140:V:12598997:12601742:-1 gene:C14C10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12599137-12601668(-) 100.0 100.0
Public Domain and Genome References
Ensembl C14C10.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98427 Hypothetical protein C14C10.3a [Caenorhabditis elegans] ref|NP_001023658.1| C14C10.3a [Caenorhabditis elegans] 0.0
blast CAI91174 Hypothetical protein C14C10.3b [Caenorhabditis elegans] ref|NP_001023659.1| C14C10.3b [Caenorhabditis elegans] 0.0
blast CAE75521 Hypothetical protein CBG23539 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181935_S_AT
gatgattactggatggcagctctgaaatcagatgcaaaaggattagacaaacgcatagag
gcgcttttattgcattcagggaaaggtgaacatccatttgcaactatggctcgaatgatt
tgtactttactaaaactggctagaattgatgaagcgttagaagttttccaaaaggtttcc
gtatcaggaaaacatttcaagcaacaacttgcctcgtttgtcgaacagaacgatttggaa
tgcatcgaacgactagctatgctcgtagaaagaggaatgattgccgaaaaacgaagaggc
ggcggcggccggtcagcagtcaacaaaagcgttattgtgagcgtgaaatgtcttgatgaa
gcagtccatggtgtccttgacaaattctacggcattggtggtcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATTACTGGATGGCAGCTCTGA 306 411 1429 Antisense
AGAGGCGCTTTTATTGCATTCAGGG 51 65 1485 Antisense
AAGGTGAACATCCATTTGCAACTAT 664 159 1511 Antisense
GGCTCGAATGATTTGTACTTTACTA 644 539 1536 Antisense
CAAGCAACAACTTGCCTCGTTTGTC 686 185 1626 Antisense
ACTTGCCTCGTTTGTCGAACAGAAC 452 103 1635 Antisense
GCATCGAACGACTAGCTATGCTCGT 710 309 1670 Antisense
CGGCCGGTCAGCAGTCAACAAAAGC 420 241 1734 Antisense
GAAGCAGTCCATGGTGTCCTTGACA 191 341 1786 Antisense
GGTGTCCTTGACAAATTCTACGGCA 660 497 1798 Antisense
AAATTCTACGGCATTGGTGGTCAGA 257 113 1810 Antisense
Sequence Source Affymetrix Proprietary Database