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[181934_s_at]

Description W03D2.7 /REP_DB=WormBase Gene ID /WP=CE14518 /TR=O02119 /GB=AAC48260.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 16      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.2
(-3)
A 		2.1
(-2)
A 		3.3
(-0.6)
A 		6.5
(3)
A 		5
B 1.2
(-3)
A 		1.8
(-2.3)
A 		4.8
(1.2)
A 		6.4
(3)
A 		5
C 1.2
(-3)
A 		2.9
(0)
A 		1.6
(-2.3)
A 		4.6
(3)
A 		3
avr 1.2
(-3) 		2.3
(-1.6) 		3.2
(-0.4) 		5.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 2.3
(-3)
A 		1.5
(-3)
A 		5.2
(-2.9)
A 		392.1
(2.3)
P 		439.8
(3)
P 		200.5
(-0.3)
A 		438
B 6
(-2.9)
A 		1.6
(-3)
A 		2
(-3)
A 		344.2
(2)
P 		415.8
(3)
P 		165.3
(-0.6)
A 		414
C 2.7
(-3)
A 		2.1
(-3)
A 		2.3
(-3)
A 		276.7
(1.1)
A 		404.2
(3)
P 		190.6
(-0.2)
A 		402
avr 3.7
(-3) 		1.7
(-3) 		3.2
(-3) 		337.7
(1.8) 		419.9
(3) 		185.5
(-0.4) 		418
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.4
(-3)
A 		0.5
(-2)
A 		0.9
(2)
A 		1
(3)
A 		1
B 0.4
(-3)
A 		0.4
(-3)
A 		1.1
(1.2)
A 		1.4
(3)
A 		1
C 0.4
(-3)
A 		0.8
(3)
A 		0.6
(-0)
A 		0.8
(3)
A 		0
avr 0.4
(-3) 		0.6
(-1.3) 		0.9
(1.3) 		1.1
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.5
(-3)
A 		1.1
(-3)
A 		99.4
(1.5)
P 		132.7
(3)
P 		48.8
(-0.8)
A 		132
B 2.1
(-2.9)
A 		0.5
(-3)
A 		0.5
(-3)
A 		91.2
(0.2)
P 		168.9
(3)
P 		61.7
(-0.8)
A 		168
C 1
(-3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		55.7
(-0.5)
A 		130.8
(3)
P 		63.8
(-0.1)
A 		130
avr 1.2
(-3) 		0.5
(-3) 		0.7
(-3) 		82.1
(0.4) 		144.1
(3) 		58.1
(-0.6) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181934_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10731
Sequence Type Exemplar sequence
Representative Public ID W03D2.7 NCBI
Target Description W03D2.7 /REP_DB=WormBase Gene ID /WP=CE14518 /TR=O02119 /GB=AAC48260.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068069(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068069 NCBI Caenorhabditis elegans W03D2.7 (W03D2.7) mRNA, complete cds. 9/11 None
SNAP00000027041 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4062560:4063656:-1 11/11 None
GENEFINDER00000027048 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4056579:4063097:-1 11/11 None
W03D2.7 ENSEMBL cdna:known chromosome:CEL140:IV:4062712:4063097:-1 gene:W03D2.7 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4062565-4063103(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03D2.7
Entrez Gene 177164 Entrez gene
SwissProt O02119 EMBL-EBI
WormBase CE28845 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48261 Hypothetical protein W03D2.6 [Caenorhabditis elegans] ref|NP_500469.3| W03D2.6 [Caenorhabditis elegans] 3.0E-79
blast NP_500206 C45G7.3 [Caenorhabditis elegans] gb|AAC19179.1| Hypothetical protein C45G7.3 [Caenorhabditis elegans] 2.0E-59
blast NP_500207 C45G7.2 [Caenorhabditis elegans] gb|AAC19181.1| Hypothetical protein C45G7.2 [Caenorhabditis elegans] 2.0E-56
blast NP_001024594 F22A3.6a [Caenorhabditis elegans] gb|AAA83197.1| Hypothetical protein F22A3.6a [Caenorhabditis elegans] 5.0E-55
blast AAC48260 Hypothetical protein W03D2.7 [Caenorhabditis elegans] ref|NP_500470.1| W03D2.7 [Caenorhabditis elegans] 7.0E-46
blast AAB94152 Hypothetical protein R07C12.3 [Caenorhabditis elegans] ref|NP_500494.1| R07C12.3 [Caenorhabditis elegans] 2.0E-42
blast AAV34784 Hypothetical protein Y54G2A.8b [Caenorhabditis elegans] ref|NP_001023508.1| Y54G2A.8b [Caenorhabditis elegans] 3.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR008597 EMBL-EBI Destabilase 1.5E-58
Pfam IPR008597 EMBL-EBI Destabilase 8.8E-39
Sequence
Target Sequence 
>C. ELEGANS:181934_S_AT
aatgatgatgtcggatccctctcatatcaaactctcatactacaaggattgcggtcaacc
tggtaagcgagccggagagtcggttgaagctgcatggagaagatgctcggatgagctgga
ctgtgcttctacttgtgttcagagctactacaatcgctacaagaaacaatgtgccggaac
tggacagggagcttgcgagataatggcccgtaaccataatggaggaccaagagggtgtaa
gaagtcggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGATGATGTCGGATCCCTCTCAT 654 163 78 Antisense
AACTCTCATACTACAAGGATTGCGG 561 141 107 Antisense
AGGATTGCGGTCAACCTGGTAAGCG 149 51 122 Antisense
AACCTGGTAAGCGAGCCGGAGAGTC 566 145 134 Antisense
GGAGAGTCGGTTGAAGCTGCATGGA 406 519 151 Antisense
GCTGCATGGAGAAGATGCTCGGATG 341 297 166 Antisense
GCTCGGATGAGCTGGACTGTGCTTC 283 299 182 Antisense
GACTGTGCTTCTACTTGTGTTCAGA 696 375 196 Antisense
TCTACTTGTGTTCAGAGCTACTACA 43 611 205 Antisense
GAGCTTGCGAGATAATGGCCCGTAA 10 387 266 Antisense
CCAAGAGGGTGTAAGAAGTCGGCAA 300 277 304 Antisense
Sequence Source Affymetrix Proprietary Database