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[181932_at]

Description ZK1053.4 /REP_DB=WormBase Gene ID /WP=CE16763 /TR=O45995 /GB=CAB04980.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 10
(-2.8)
A 		5.5
(-3)
A 		58.3
(-0.1)
A 		114.8
(3)
P 		109
B 34.2
(-3)
A 		41.6
(-1.1)
A 		34.1
(-3)
A 		57.4
(3)
P 		23
C 43.7
(-2.3)
P 		61.5
(-0.7)
A 		35.5
(-3)
A 		103.8
(3)
P 		68
avr 29.3
(-3) 		36.2
(-2.3) 		42.6
(-1.7) 		92
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 73.4
(-1.6)
P 		39.1
(-2.4)
A 		15.9
(-3)
A 		19.6
(-2.9)
A 		46.1
(-2.3)
P 		263.5
(3)
P 		248
B 50.1
(-2)
P 		35.7
(-2.3)
A 		5.1
(-3)
A 		17.4
(-2.7)
A 		91
(-1)
P 		265
(3)
P 		260
C 52.4
(-2.1)
P 		34
(-2.5)
A 		13.9
(-3)
A 		33.8
(-2.5)
A 		45.2
(-2.2)
P 		259.6
(3)
P 		246
avr 58.6
(-1.9) 		36.3
(-2.4) 		11.6
(-3) 		23.6
(-2.7) 		60.8
(-1.8) 		262.7
(3) 		251
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.6
(-2.1)
A 		1.2
(-3)
A 		15.3
(2.4)
A 		16.8
(3)
P 		16
B 10.9
(1.2)
A 		10.3
(0.3)
A 		7.9
(-3)
A 		12.2
(3)
P 		4
C 14.5
(-0.6)
P 		17.7
(3)
A 		12.4
(-3)
A 		17.5
(2.8)
P 		5
avr 9.7
(-3) 		9.7
(-3) 		11.9
(-0.7) 		15.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 13.5
(-2)
P 		13.9
(-2)
A 		3.5
(-3)
A 		5
(-2.9)
A 		13.9
(-2)
P 		64.1
(3)
P 		61
B 17.4
(-2)
P 		11.9
(-2.3)
A 		1.2
(-3)
A 		4.6
(-2.8)
A 		37
(-0.8)
P 		98.8
(3)
P 		98
C 19.4
(-1.9)
P 		10.4
(-2.5)
A 		3.5
(-3)
A 		6.8
(-2.8)
A 		14.6
(-2.2)
P 		86.9
(3)
P 		83
avr 16.8
(-2) 		12.1
(-2.3) 		2.7
(-3) 		5.5
(-2.8) 		21.8
(-1.6) 		83.3
(3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181932_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1590
Sequence Type Exemplar sequence
Representative Public ID ZK1053.4 NCBI
Target Description ZK1053.4 /REP_DB=WormBase Gene ID /WP=CE16763 /TR=O45995 /GB=CAB04980.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060922(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060922 NCBI Caenorhabditis elegans ZK1053.4 (ZK1053.4) mRNA, complete cds. 11/11 None
GENEFINDER00000040809 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13246659:13252716:1 11/11 None
SNAP00000040801 ENSEMBL cdna:SNAP chromosome:CEL140:I:13249788:13252726:1 11/11 None
ZK1053.4 ENSEMBL cdna:known chromosome:CEL140:I:13249783:13252791:1 gene:ZK1053.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13249820-13252657(+) 97.9 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1053.4
Entrez Gene 173188 Entrez gene
SwissProt O45995 EMBL-EBI
WormBase CE16763 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04980 Hypothetical protein ZK1053.4 [Caenorhabditis elegans] ref|NP_493323.1| ZK1053.4 [Caenorhabditis elegans] 0.0
blast CAB04979 Hypothetical protein ZK1053.6 [Caenorhabditis elegans] ref|NP_493322.1| ZK1053.6 [Caenorhabditis elegans] 0.0
blast CAE72997 Hypothetical protein CBG20346 [Caenorhabditis briggsae] 1.0E-151
blast CAB03285 Hypothetical protein T04D3.1 [Caenorhabditis elegans] ref|NP_493340.1| T04D3.1 [Caenorhabditis elegans] 3.0E-60
blast CAB03105 Hypothetical protein F44F1.7 [Caenorhabditis elegans] emb|CAB07642.1| Hypothetical protein F44F1.7 [Caenorhabditis elegans] ref|NP_493332.1| Very Early Transcript family member (vet-6) [Caenorhabditis elegans] 2.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR006667 EMBL-EBI MgtE integral membrane region 1.3E-6
Pfam IPR006667 EMBL-EBI MgtE integral membrane region 1.3E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000040809 6 72-94,159-181,218-240,249-271,281-303,402-424
Sequence
Target Sequence 
>C. ELEGANS:181932_AT
tggatgtcctttacatgcttcaacccaacggccagtaccttaaatattcgttgaacgacg
atgaaaacgagctgaacttgcatgtatgtgattgttgcaagactggaaccactgaaaatg
atctgatcccaaagtactccgaatattgtgctaaaacttgcaaatacatcatccacgtcc
agaaccaattcacagagaaaatggagacatatgcatatgattgtgagaagaagcgattcc
atcaagtcacttgtccaggattagtatacgattcggaaaaagtacaggagggaaatattt
tctttatactagagcaaaattccatgcagggagtcgaagtaattatgagagatgatgatg
gacagctgagaaaagagcagttttgtatggtgaagaagcaattcgtgaagcttccgaaaa
ctaccgtcgcaacgtttgccgtgcagattgctgagaagaaaatgaagaatctgctgccga
atgttgagatttttcttccttggccacaaagatttactccaagtttgtcacaatgttctt
ctgttcaagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGATGTCCTTTACATGCTTCAACC 528 549 1397 Antisense
CGGCCAGTACCTTAAATATTCGTTG 74 1 1425 Antisense
AACGAGCTGAACTTGCATGTATGTG 160 143 1462 Antisense
CTTGCAAATACATCATCCACGTCCA 655 217 1553 Antisense
TCCACGTCCAGAACCAATTCACAGA 231 589 1568 Antisense
GAAGCGATTCCATCAAGTCACTTGT 99 343 1626 Antisense
GCAACGTTTGCCGTGCAGATTGCTG 11 321 1825 Antisense
AAGAATCTGCTGCCGAATGTTGAGA 164 153 1861 Antisense
TGTTGAGATTTTTCTTCCTTGGCCA 425 563 1878 Antisense
GATTTACTCCAAGTTTGTCACAATG 57 427 1907 Antisense
GTCACAATGTTCTTCTGTTCAAGCA 183 465 1923 Antisense
Sequence Source Affymetrix Proprietary Database