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[181931_at]

Description F56A3.3 /REP_DB=WormBase Gene ID /WP=CE11218 /TR=P91350 /GB=AAB37803.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 40      4grp_high_8_8 > 42      6grp_highest_nonorm > 84      6grp_total > 56      4grp_total > 53      6grp_cgc > 37      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 525.2
(2.7)
P 		532.1
(3)
P 		449.3
(-0)
P 		368.2
(-3)
P 		164
B 609.9
(3)
P 		528.8
(-0.3)
P 		561.7
(1)
P 		463.1
(-3)
P 		147
C 548.7
(3)
P 		531.2
(1.7)
P 		465.5
(-3)
P 		476.3
(-2.2)
P 		83
avr 561.3
(3) 		530.7
(1.5) 		492.2
(-0.3) 		435.9
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 392
1 2 3 4 5 6 range
A 589.1
(0)
P 		684
(1.5)
P 		491.1
(-1.5)
P 		519.1
(-1)
P 		391.5
(-3)
P 		783.5
(3)
P 		392
B 529.1
(-1)
P 		579.5
(-0.1)
P 		542.9
(-0.7)
P 		554.6
(-0.5)
P 		411.2
(-3)
P 		759.7
(3)
P 		349
C 587.6
(-0.5)
P 		510.2
(-2.6)
P 		596.3
(-0.2)
P 		545.9
(-1.6)
P 		494.8
(-3)
P 		715.3
(3)
P 		221
avr 568.6
(-0.5) 		591.2
(-0) 		543.4
(-0.9) 		539.9
(-1) 		432.5
(-3) 		752.8
(3) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 191.2
(3)
P 		115.5
(-0.3)
P 		117.4
(-0.2)
P 		53.9
(-3)
P 		137
B 194.5
(3)
P 		130.6
(-1)
P 		130.2
(-1)
P 		98.7
(-3)
P 		96
C 181.6
(3)
P 		152.7
(1.3)
P 		162.3
(1.9)
P 		80.3
(-3)
P 		101
avr 189.1
(3) 		132.9
(-0) 		136.6
(0.2) 		77.6
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 108.6
(-2.9)
P 		243.3
(3)
P 		107
(-3)
P 		131.6
(-1.9)
P 		118.1
(-2.5)
P 		190.8
(0.7)
P 		136
B 184.1
(-0.9)
P 		192.9
(-0.6)
P 		131.8
(-3)
P 		146.9
(-2.4)
P 		167.1
(-1.6)
P 		283.3
(3)
P 		152
C 217.8
(2)
P 		155.7
(-0.9)
P 		151.8
(-1.1)
P 		109.8
(-3)
P 		160.1
(-0.7)
P 		239.5
(3)
P 		130
avr 170.2
(-0.7) 		197.3
(0.8) 		130.2
(-3) 		129.4
(-3) 		148.4
(-1.9) 		237.9
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181931_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1149
Sequence Type Exemplar sequence
Representative Public ID F56A3.3 NCBI
Target Description F56A3.3 /REP_DB=WormBase Gene ID /WP=CE11218 /TR=P91350 /GB=AAB37803.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170857(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170857 NCBI Caenorhabditis elegans Nuclear Pore complex Protein family member (npp-6) (npp-6) mRNA, complete cds. 11/11 None
SNAP00000016708 ENSEMBL cdna:SNAP chromosome:CEL140:I:5176839:5182461:1 11/11 None
GENEFINDER00000016716 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5176839:5182461:1 11/11 None
F56A3.3a.1 ENSEMBL cdna:known chromosome:CEL140:I:5176469:5182648:1 gene:F56A3.3 11/11 None
F56A3.3a.2 ENSEMBL cdna:known chromosome:CEL140:I:5176469:5182804:1 gene:F56A3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172156 2 1 NM_170857 181931_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5176468-5182461(+) 100.0 100.0
Public Domain and Genome References
Ensembl F56A3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37803 Nuclear pore complex protein protein 6, isoform a [Caenorhabditis elegans] ref|NP_740844.1| Nuclear Pore complex Protein family member (npp-6) [Caenorhabditis elegans] 0.0
blast CAE56130 Hypothetical protein CBG23742 [Caenorhabditis briggsae] 0.0
blast AAL77180 Nuclear pore complex protein protein 6, isoform b [Caenorhabditis elegans] ref|NP_740845.1| Nuclear Pore complex Protein family member (npp-6) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181931_AT
attcccacaggctattctttaccatgacacgtgaagcaataatgattgatgctcttcggg
atgacctcaacatcgaaatggcagcaactcatcaagccggatgggttcgtcttaaccgca
ggcactgtgctgccgtcgctaccgctgaagaacattggtcggtggttcgtgggttggttg
atgcggctcaagcagaatggcctggagattctagaccacttcgaggatccactgaagcgt
ttcttagttttaagctgaatgttcctgtctggttgcacagtgtttttgagaataatgacg
ctaacgattaccttagatgtctcgtggattatgaaagttattcaattgctcttcaagttc
tcagtgatattgtcgaacaagaaactctacaagcttcccagtcaaatgcaagaacctggc
ttccatacggaatcattgatgaattgatgatcaggagtgccgattatatccggaaaatga
gtctaaaatctccagaagaccaagtagtagctgcagaagttgcaaatttgagaaaaagtg
ctgatcagaaaatgttgatctatttccgaaaagtggctgacttcgagcaagctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCCACAGGCTATTCTTTACCAT 504 9 4076 Antisense
ATTGATGCTCTTCGGGATGACCTCA 453 5 4120 Antisense
TCAAGCCGGATGGGTTCGTCTTAAC 675 627 4167 Antisense
TCTTAACCGCAGGCACTGTGCTGCC 389 615 4185 Antisense
ACATTGGTCGGTGGTTCGTGGGTTG 386 95 4227 Antisense
GGCCTGGAGATTCTAGACCACTTCG 137 543 4274 Antisense
TCGAGGATCCACTGAAGCGTTTCTT 410 603 4296 Antisense
GCTGAATGTTCCTGTCTGGTTGCAC 478 295 4329 Antisense
AAGAAACTCTACAAGCTTCCCAGTC 241 153 4454 Antisense
GCAAGAACCTGGCTTCCATACGGAA 384 317 4483 Antisense
AAGTGGCTGACTTCGAGCAAGCTCA 520 159 4646 Antisense
Sequence Source Affymetrix Proprietary Database