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[181930_at]

Description ZK355.3 /REP_DB=WormBase Gene ID /WP=CE23458 /TR=Q9N4P0 /GB=AAF39997.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 10.3
(-2.9)
A 		8.8
(-2.9)
A 		6.1
(-3)
A 		269.6
(3)
P 		264
B 5.7
(-3)
A 		7.2
(-2.9)
A 		4.1
(-3)
A 		223
(3)
A 		219
C 3.4
(-3)
A 		6.2
(-2.9)
A 		3.5
(-3)
A 		224.4
(3)
P 		221
avr 6.5
(-3) 		7.4
(-2.9) 		4.6
(-3) 		239
(3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 929
1 2 3 4 5 6 range
A 65.6
(-2.7)
A 		26.7
(-3)
A 		118.4
(-2.3)
A 		498.7
(0.5)
P 		825.9
(3)
P 		510.2
(0.6)
M 		799
B 4.8
(-3)
A 		15.5
(-2.9)
A 		193
(-1.5)
A 		746.9
(3)
P 		396.9
(0.2)
P 		264.1
(-0.9)
P 		742
C 8.4
(-3)
A 		9.1
(-3)
A 		150.2
(-2.1)
A 		933.9
(3)
P 		590.6
(0.8)
A 		405.8
(-0.4)
P 		926
avr 26.3
(-2.9) 		17.1
(-3) 		153.9
(-1.8) 		726.5
(3) 		604.5
(2) 		393.4
(0.2) 		709
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 3.8
(-2.7)
A 		1.9
(-3)
A 		1.6
(-3)
A 		39.5
(3)
P 		38
B 1.8
(-2.9)
A 		1.8
(-2.9)
A 		0.9
(-3)
A 		47.5
(3)
A 		47
C 1.1
(-3)
A 		1.8
(-2.9)
A 		1.2
(-3)
A 		37.8
(3)
P 		37
avr 2.2
(-2.9) 		1.8
(-2.9) 		1.2
(-3) 		41.6
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 12.1
(-2.9)
A 		9.5
(-3)
A 		25.8
(-2.6)
A 		126.5
(-0.1)
P 		249.2
(3)
P 		124.2
(-0.1)
M 		240
B 1.7
(-3)
A 		5.2
(-2.9)
A 		46.9
(-1.6)
A 		197.8
(3)
P 		161.2
(1.9)
P 		98.5
(-0)
P 		196
C 3.1
(-3)
A 		2.8
(-3)
A 		38.2
(-1.9)
A 		187.8
(2.9)
P 		191.1
(3)
A 		135.8
(1.2)
P 		188
avr 5.6
(-3) 		5.8
(-3) 		37
(-2) 		170.7
(2.1) 		200.5
(3) 		119.5
(0.5) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181930_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4910
Sequence Type Exemplar sequence
Representative Public ID ZK355.3 NCBI
Target Description ZK355.3 /REP_DB=WormBase Gene ID /WP=CE23458 /TR=Q9N4P0 /GB=AAF39997.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062000(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062000 NCBI Caenorhabditis elegans ZK355.3 (ZK355.3) mRNA, complete cds. 11/11 None
ZK355.3 ENSEMBL cdna:known chromosome:CEL140:II:2927056:2927629:-1 gene:ZK355.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021471 4/11 Cross Hyb Matching Probes None
GENEFINDER00000021480 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2927054-2927628(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK355.3
Entrez Gene 191298 Entrez gene
SwissProt Q9N4P0 EMBL-EBI
WormBase CE23458 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39997 Hypothetical protein ZK355.3 [Caenorhabditis elegans] ref|NP_494401.1| ZK355.3 [Caenorhabditis elegans] 7.0E-98
Sequence
Target Sequence 
>C. ELEGANS:181930_AT
taccgttttatatacgcctcttgcctcctttgcctggcacaagaccagcaccgaagctta
tcaactttccggtcttgctcatcgtaaaactgaaccaaatttgtcaaaaacaaaaatatt
tgcgtacaaaaacaatttttattgataacctgataagatcctctttaaaaaaggaactgt
ggatgtttttagtactttccgtttcacttacttacttacctagtccttctcagcctgcgg
cccagatttcggcccaacccaagcccggcccagacttccaagctttttggtcttgccctt
acactaactacttctttttgtttcaggtcatggactcccaaggctcaaaatcctcgaata
atcaagtggcgactttcgcggaccatcaggttcaagctcattgtgatagcagcagcgttc
gccaagttgaagtcaagatcacacatgaaacggctacctata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCGTTTTATATACGCCTCTTGCC 222 649 26 Antisense
CCTCCTTTGCCTGGCACAAGACCAG 107 267 49 Antisense
AGCTTATCAACTTTCCGGTCTTGCT 415 77 80 Antisense
TCCGGTCTTGCTCATCGTAAAACTG 634 593 93 Antisense
TCACTTACTTACTTACCTAGTCCTT 668 627 229 Antisense
GGCCCAGACTTCCAAGCTTTTTGGT 520 541 292 Antisense
TTTCAGGTCATGGACTCCCAAGGCT 421 669 346 Antisense
TCAAGTGGCGACTTTCGCGGACCAT 586 631 387 Antisense
GGACCATCAGGTTCAAGCTCATTGT 385 523 405 Antisense
TTGTGATAGCAGCAGCGTTCGCCAA 48 709 426 Antisense
ATCACACATGAAACGGCTACCTATA 622 27 463 Antisense
Sequence Source Affymetrix Proprietary Database