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[181929_at]

Description F09C6.10 /REP_DB=WormBase Gene ID /WP=CE18583 /TR=Q9XV99 /GB=CAB04065.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.3
(-3)
A 		4.8
(-2)
A 		3.3
(-2.6)
A 		17.1
(3)
A 		15
B 4.5
(-1.8)
A 		6.8
(3)
A 		4.1
(-2.6)
A 		3.9
(-3)
A 		3
C 3.4
(-3)
A 		12.9
(3)
A 		3.4
(-3)
A 		6.5
(-1)
A 		10
avr 3.4
(-3) 		8.2
(2) 		3.6
(-2.8) 		9.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 5
(0.3)
A 		5.3
(0.6)
A 		3.1
(-1.9)
A 		7.3
(3)
A 		6.8
(2.4)
A 		2.2
(-3)
A 		5
B 4
(-2.2)
A 		4.7
(-1.2)
A 		3.4
(-3)
A 		4.6
(-1.3)
A 		7.7
(3)
A 		6.4
(1.2)
A 		4
C 3.9
(-2.9)
A 		3.3
(-3)
A 		12.2
(-1.8)
A 		49.3
(3)
A 		3.4
(-3)
A 		5.3
(-2.7)
A 		46
avr 4.3
(-3) 		4.4
(-3) 		6.2
(-2.3) 		20.4
(3) 		6
(-2.4) 		4.6
(-2.9) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.8
(-3)
A 		1.1
(-1.9)
A 		0.9
(-2.6)
A 		2.5
(3)
A 		2
B 1.4
(1)
A 		1.7
(3)
A 		1
(-1.7)
A 		0.8
(-3)
A 		1
C 1.1
(-3)
A 		3.7
(3)
A 		1.2
(-2.8)
A 		1.1
(-3)
A 		3
avr 1.1
(-2.5) 		2.2
(3) 		1
(-3) 		1.5
(-0.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.9
(-1.5)
A 		1.9
(2.3)
A 		0.7
(-2.3)
A 		1.9
(2.3)
A 		2.1
(3)
A 		0.5
(-3)
A 		2
B 1.4
(-1.4)
A 		1.6
(-0.9)
A 		0.8
(-3)
A 		1.2
(-2)
A 		3.1
(3)
A 		2.4
(1.2)
A 		2
C 1.4
(-2.7)
A 		1
(-3)
A 		3.1
(-1.6)
A 		9.9
(3)
A 		1.1
(-2.9)
A 		1.8
(-2.5)
A 		9
avr 1.2
(-3) 		1.5
(-2.4) 		1.5
(-2.4) 		4.3
(3) 		2.1
(-1.3) 		1.6
(-2.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181929_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12714
Sequence Type Exemplar sequence
Representative Public ID F09C6.10 NCBI
Target Description F09C6.10 /REP_DB=WormBase Gene ID /WP=CE18583 /TR=Q9XV99 /GB=CAB04065.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074873(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074873 NCBI Caenorhabditis elegans F09C6.10 (F09C6.10) mRNA, complete cds. 11/11 None
GENEFINDER00000006360 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16918079:16918739:-1 11/11 None
F09C6.10 ENSEMBL cdna:known chromosome:CEL140:V:16918079:16918739:-1 gene:F09C6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16918078-16918739(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09C6.10
Entrez Gene 184236 Entrez gene
SwissProt Q9XV99 EMBL-EBI
WormBase CE18583 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04065 Hypothetical protein F09C6.10 [Caenorhabditis elegans] ref|NP_507274.1| F09C6.10 [Caenorhabditis elegans] 9.0E-92
blast CAB04023 Hypothetical protein D1086.6 [Caenorhabditis elegans] ref|NP_506492.2| D1086.6 [Caenorhabditis elegans] 3.0E-25
blast CAI46570 Hypothetical protein D1086.11 [Caenorhabditis elegans] ref|NP_001023750.1| D1086.11 [Caenorhabditis elegans] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:181929_AT
gcacaatatgcggtcatggcatctgatgatttacctacatccacaggaataccaaccgaa
atgagagcttgtcaaagtaaatgtggagtacccttggaaatcagaatgaaacctactaaa
cccggatgcaaaaaatggaacgaatgtgacgataatgaaaaacaatgtgccagtggaccg
aaattacaaattatttacactaacaatgtgtgtaaccaatttgtaaatatctgtgagaat
agagaatatgctaattggaacatgcaaaaatgtggaatcccccatgttgtcagcaaaaat
cccactccagaagcgtgcgaaaaatggaacaaatgttctggaaagcaaaaggaatgtgct
gctcatggaagagatgactacttgtacgctgataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACAATATGCGGTCATGGCATCTG 240 317 49 Antisense
ATGGCATCTGATGATTTACCTACAT 283 53 64 Antisense
ACATCCACAGGAATACCAACCGAAA 364 105 85 Antisense
ATGTGGAGTACCCTTGGAAATCAGA 141 49 129 Antisense
TGAAACCTACTAAACCCGGATGCAA 499 571 155 Antisense
ATGTGCCAGTGGACCGAAATTACAA 462 49 213 Antisense
AATCCCCCATGTTGTCAGCAAAAAT 570 167 324 Antisense
TGTTGTCAGCAAAAATCCCACTCCA 701 561 333 Antisense
ATCCCACTCCAGAAGCGTGCGAAAA 564 37 347 Antisense
AAGGAATGTGCTGCTCATGGAAGAG 459 161 397 Antisense
GAGATGACTACTTGTACGCTGATAA 138 397 419 Antisense
Sequence Source Affymetrix Proprietary Database