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[181928_at]

Description F35C8.1 /REP_DB=WormBase Gene ID /WP=CE04493 /TR=Q20031 /GB=AAA81714.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 09      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 4.3
(-2.9)
A 		5.8
(-2.6)
A 		3.9
(-3)
A 		34.8
(3)
A 		31
B 3.1
(-3)
A 		13.3
(-1.8)
A 		3.7
(-2.9)
A 		55.6
(3)
A 		53
C 3.5
(-3)
A 		5.4
(-2.8)
A 		20.1
(-1.1)
A 		56.1
(3)
A 		53
avr 3.6
(-3) 		8.2
(-2.4) 		9.2
(-2.3) 		48.8
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 3.8
(-3)
A 		3.7
(-3)
A 		36.5
(-2.1)
A 		158
(1.1)
M 		229.1
(3)
A 		90.5
(-0.7)
A 		225
B 4
(-3)
A 		15.6
(-2.7)
A 		4.8
(-3)
A 		119
(-0.1)
A 		242.9
(3)
P 		91
(-0.8)
A 		239
C 6.3
(-3)
A 		6.7
(-3)
A 		5.6
(-3)
A 		88.2
(-0.4)
A 		196.5
(3)
A 		83.5
(-0.6)
M 		191
avr 4.7
(-3) 		8.7
(-2.9) 		15.6
(-2.7) 		121.7
(0.2) 		222.8
(3) 		88.3
(-0.7) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.6
(-2.1)
A 		1.2
(-2.7)
A 		1
(-3)
A 		5.1
(3)
A 		4
B 1
(-2.9)
A 		3.3
(-1.7)
A 		0.9
(-3)
A 		11.8
(3)
A 		11
C 1.1
(-3)
A 		1.6
(-2.6)
A 		7
(1.2)
A 		9.5
(3)
A 		8
avr 1.2
(-3) 		2
(-2.4) 		3
(-1.6) 		8.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.3
(-2.9)
A 		8
(-2.4)
A 		40.1
(0.5)
M 		69.1
(3)
A 		22
(-1.1)
A 		68
B 1.4
(-3)
A 		5.2
(-2.8)
A 		1.2
(-3)
A 		31.5
(-1.1)
A 		98.7
(3)
P 		34
(-1)
A 		98
C 2.3
(-2.9)
A 		2
(-2.9)
A 		1.4
(-3)
A 		17.7
(-1.4)
A 		63.6
(3)
A 		27.9
(-0.4)
M 		62
avr 1.5
(-3) 		2.8
(-2.9) 		3.5
(-2.8) 		29.8
(-0.8) 		77.1
(3) 		28
(-0.9) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181928_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17024
Sequence Type Exemplar sequence
Representative Public ID F35C8.1 NCBI
Target Description F35C8.1 /REP_DB=WormBase Gene ID /WP=CE04493 /TR=Q20031 /GB=AAA81714.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076515(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076515 NCBI Caenorhabditis elegans F35C8.1 (F35C8.1) mRNA, complete cds. 11/11 None
F35C8.1 ENSEMBL cdna:known chromosome:CEL140:X:5376034:5379008:1 gene:F35C8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029098 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5376034-5379009(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35C8.1
Entrez Gene 185267 Entrez gene
SwissProt Q58AU7 EMBL-EBI
WormBase CE38341 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16259 hypothetical protein F35C8.1 - Caenorhabditis elegans 0.0
blast AAX55692 Hypothetical protein F35C8.1 [Caenorhabditis elegans] ref|NP_508916.2| F35C8.1 [Caenorhabditis elegans] 1.0E-170
blast T16259 hypothetical protein F35C8.1 - Caenorhabditis elegans 1.0E-170
blast AAX55692 Hypothetical protein F35C8.1 [Caenorhabditis elegans] ref|NP_508916.2| F35C8.1 [Caenorhabditis elegans] 1.0E-169
blast AAX55693 Hypothetical protein F35C8.2 [Caenorhabditis elegans] ref|NP_508915.2| F35C8.2 [Caenorhabditis elegans] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 3.9E-6
Pfam IPR000719 EMBL-EBI Protein kinase 7.4E-31
Pfam IPR000719 EMBL-EBI Protein kinase 7.4E-31
Sequence
Target Sequence 
>C. ELEGANS:181928_AT
aaatggctctcagtgcatcagttctcaaaactgaagctttgaagcaaggtggagcgattc
cagagtttgtaattggacgtatcgtttgttctgtaattcacgcaatgtggtttttaaagg
atagattgcaaatcattcatcgggatattaaaccaggcaatattttgattgactatgatg
ggagagtcaaaatttgcgattttggaatatgtgggattctagaaaattctattgctgttt
cagatacagggtgtcaacaatacactgctcctgaaatccttgtgaaaggagtaagtaact
cgccagggtattctatcaaaagcgatatttggtcgctaggaatcaccatctttgagcttg
ctactttgaggtatccatacccagttggattttcggagttcacacttttgtctgctattg
tgacaacaccagcaccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGGCTCTCAGTGCATCAGTTCT 232 121 890 Antisense
GGAGCGATTCCAGAGTTTGTAATTG 596 519 940 Antisense
GGACGTATCGTTTGTTCTGTAATTC 330 523 964 Antisense
GGGTGTCAACAATACACTGCTCCTG 220 497 1138 Antisense
ACTGCTCCTGAAATCCTTGTGAAAG 84 99 1153 Antisense
GTAACTCGCCAGGGTATTCTATCAA 694 461 1184 Antisense
AGGAATCACCATCTTTGAGCTTGCT 212 55 1227 Antisense
GAGCTTGCTACTTTGAGGTATCCAT 189 387 1243 Antisense
GTTGGATTTTCGGAGTTCACACTTT 63 433 1273 Antisense
GAGTTCACACTTTTGTCTGCTATTG 163 399 1285 Antisense
GCTATTGTGACAACACCAGCACCCT 96 305 1303 Antisense
Sequence Source Affymetrix Proprietary Database