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[181926_at]

Description B0212.2 /REP_DB=WormBase Gene ID /WP=CE16768 /TR=O45066 /GB=AAC02567.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 28      6grp_total > 02      4grp_total > 34      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 28
(-3)
A 		70.2
(1.7)
A 		81.5
(3)
A 		79
(2.7)
P 		54
B 70
(1.6)
M 		78.7
(3)
P 		42.2
(-3)
A 		54
(-1.1)
M 		37
C 74.7
(-1.2)
P 		95.8
(3)
P 		65.7
(-3)
P 		85
(0.8)
M 		30
avr 57.6
(-3) 		81.6
(3) 		63.1
(-1.6) 		72.7
(0.8) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 42.1
(0.4)
A 		33.9
(-0.4)
A 		68
(3)
M 		53.2
(1.5)
A 		8.3
(-3)
A 		56.5
(1.8)
A 		60
B 61.9
(1.1)
P 		87.8
(3)
A 		36.3
(-0.8)
A 		65
(1.3)
A 		46.4
(-0)
P 		5.8
(-3)
A 		82
C 65.7
(-0.2)
A 		117.3
(3)
A 		21.4
(-3)
A 		47.2
(-1.4)
A 		62.6
(-0.4)
A 		27.3
(-2.6)
A 		96
avr 56.6
(0.2) 		79.7
(3) 		41.9
(-1.6) 		55.1
(0) 		39.1
(-1.9) 		29.9
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.2
(-3)
A 		15.2
(-0.3)
A 		21.3
(3)
A 		11.6
(-2.2)
P 		11
B 22.3
(3)
M 		19.4
(1.6)
P 		9.8
(-3)
A 		11.5
(-2.2)
M 		13
C 24.7
(1.7)
P 		27.5
(3)
P 		22.9
(0.9)
P 		14.3
(-3)
M 		13
avr 19.1
(1.8) 		20.7
(3) 		18
(1) 		12.5
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 7.8
(-0.4)
A 		12
(1.6)
A 		14.8
(3)
M 		13.5
(2.4)
A 		2.5
(-3)
A 		13.8
(2.5)
A 		12
B 21.5
(1.3)
P 		29.2
(3)
A 		8.8
(-1.5)
A 		17.2
(0.3)
A 		18.8
(0.7)
P 		2.2
(-3)
A 		27
C 24.4
(0.7)
A 		35.8
(3)
A 		5.5
(-3)
A 		9.5
(-2.2)
A 		20.3
(-0.1)
A 		9.2
(-2.3)
A 		30
avr 17.9
(0.3) 		25.7
(3) 		9.7
(-2.5) 		13.4
(-1.3) 		13.9
(-1.1) 		8.4
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181926_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11024
Sequence Type Exemplar sequence
Representative Public ID B0212.2 NCBI
Target Description B0212.2 /REP_DB=WormBase Gene ID /WP=CE16768 /TR=O45066 /GB=AAC02567.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026094
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
B0212.2 ENSEMBL cdna:known chromosome:CEL140:IV:3565197:3571750:1 gene:B0212.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026094 8/11 Cross Hyb Matching Probes None
NM_067972 1/11 Cross Hyb Matching Probes None
SNAP00000040983 1/11 Cross Hyb Matching Probes None
SNAP00000040984 3/11 Cross Hyb Matching Probes None
GENEFINDER00000040988 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3565161-3571756(+) 98.96 100.0
Public Domain and Genome References
Ensembl B0212.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast E88651 protein B0212.2 [imported] - Caenorhabditis elegans 0.0
blast AAX22296 Serpentine receptor, class e (epsilon) protein 5 [Caenorhabditis elegans] ref|NP_500373.2| Serpentine Receptor, class E (epsilon) family member (sre-5) [Caenorhabditis elegans] 0.0
blast CAE69018 Hypothetical protein CBG15016 [Caenorhabditis briggsae] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 7.0E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
B0212.2 6 32-54,114-136,146-168,175-194,229-251,264-286
Sequence
Target Sequence 
>C. ELEGANS:181926_AT
agaggttatcaatttccgatgctcaagctcaatctgttatcacttcaagatcgatatcca
atcattctgttatgacacggccagattctatagaattggatagtatttgcgaagcagggg
attccatggatgatttgagggaaatactatcacatactgaaacaactccaactcgaacgc
ttccaacgagatttgagagaatggccagtcagatgacttgccctatgataggtgtgaaaa
agttgtcaactgacaagttgcaggaaattttcttgcgacaaggggtcgaagagccggaag
agcagcaagaaccagaagaagctatgggagtgccgacacaagccgaccaactggaccatg
tacgctttacgagcggtattgaacgaccagttcagctaacaagaattgattcaaactact
cgattagtgaaaacgaggaggaaagcgaaaatgggtcgacactggatattgacaagactc
ccgagtctgcagaaaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGGTTATCAATTTCCGATGCTCA 372 67 1163 Antisense
GATCGATATCCAATCATTCTGTTAT 16 419 1211 Antisense
GTTATGACACGGCCAGATTCTATAG 304 447 1231 Antisense
CACATACTGAAACAACTCCAACTCG 215 195 1313 Antisense
CTCCAACTCGAACGCTTCCAACGAG 242 237 1328 Antisense
GGCCAGTCAGATGACTTGCCCTATG 19 545 1365 Antisense
GCTATGGGAGTGCCGACACAAGCCG 447 303 1483 Antisense
CACAAGCCGACCAACTGGACCATGT 325 193 1499 Antisense
CCAACTGGACCATGTACGCTTTACG 567 269 1509 Antisense
ACGAGCGGTATTGAACGACCAGTTC 449 87 1531 Antisense
AGACTCCCGAGTCTGCAGAAACCAC 425 67 1637 Antisense
Sequence Source Affymetrix Proprietary Database