[Home] | [Total List]

[181925_at]

Description Y9C2UA.1 /REP_DB=WormBase Gene ID /WP=CE19026 /TR=Q9XXU0 /GB=CAA15517.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 31      6grp_total > 24      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 861
1 2 3 4 range
A 1545.8
(3)
P 		909
(-2.4)
P 		844
(-3)
P 		1407.4
(1.8)
P 		702
B 1451.7
(1.8)
P 		984.9
(-1.4)
P 		759.3
(-3)
P 		1620.6
(3)
P 		861
C 1538.9
(3)
P 		1131.3
(-0.4)
P 		822.8
(-3)
P 		1398.7
(1.8)
P 		716
avr 1512.1
(3) 		1008.4
(-1.3) 		808.7
(-3) 		1475.6
(2.7) 		703

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 926
1 2 3 4 5 6 range
A 1225.9
(3)
P 		1121.7
(2.1)
P 		1087.5
(1.8)
P 		677.8
(-1.9)
P 		550.9
(-3)
P 		590.9
(-2.6)
P 		675
B 1477.2
(3)
P 		1400.1
(2.5)
P 		1162
(0.8)
P 		868.6
(-1.2)
P 		612.3
(-3)
P 		628.7
(-2.9)
P 		865
C 1421.6
(3)
P 		1375.9
(2.7)
P 		1045.2
(0.3)
P 		840.4
(-1.1)
P 		579.1
(-3)
P 		650.1
(-2.5)
P 		843
avr 1374.9
(3) 		1299.2
(2.4) 		1098.2
(0.9) 		795.6
(-1.4) 		580.8
(-3) 		623.2
(-2.7) 		794
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 387
1 2 3 4 range
A 562.8
(3)
P 		197.3
(-3)
P 		220.6
(-2.6)
P 		206
(-2.9)
P 		366
B 462.9
(3)
P 		243.3
(-1.6)
P 		175.9
(-3)
P 		345.3
(0.5)
P 		287
C 509.4
(3)
P 		325.2
(-1)
P 		286.8
(-1.9)
P 		235.8
(-3)
P 		274
avr 511.7
(3) 		255.3
(-2.4) 		227.8
(-3) 		262.4
(-2.3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 383
1 2 3 4 5 6 range
A 226
(-1.1)
P 		398.9
(3)
P 		236.8
(-0.8)
P 		171.9
(-2.3)
P 		166.2
(-2.5)
P 		143.9
(-3)
P 		255
B 514
(3)
P 		466
(2)
P 		282.2
(-1.9)
P 		230.1
(-3)
P 		248.8
(-2.6)
P 		234.4
(-2.9)
P 		284
C 526.9
(3)
P 		419.8
(1.2)
P 		266
(-1.4)
P 		169
(-3)
P 		187.4
(-2.7)
P 		217.6
(-2.2)
P 		358
avr 422.3
(2.9) 		428.2
(3) 		261.7
(-1.2) 		190.3
(-3) 		200.8
(-2.7) 		198.6
(-2.8) 		238
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181925_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3052
Sequence Type Exemplar sequence
Representative Public ID Y9C2UA.1 NCBI
Target Description Y9C2UA.1 /REP_DB=WormBase Gene ID /WP=CE19026 /TR=Q9XXU0 /GB=CAA15517.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182213(10), NM_063548(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182213 NCBI Caenorhabditis elegans Y9C2UA.1b (Y9C2UA.1) mRNA, complete cds. 10/11 None
NM_063548 NCBI Caenorhabditis elegans Y9C2UA.1a (Y9C2UA.1) mRNA, complete cds. 10/11 None
SNAP00000006404 ENSEMBL cdna:SNAP chromosome:CEL140:II:9142819:9145082:1 10/11 None
GENEFINDER00000006412 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9142821:9145082:1 10/11 None
Y9C2UA.1b ENSEMBL cdna:known chromosome:CEL140:II:9139619:9145223:1 gene:Y9C2UA.1 10/11 None
Y9C2UA.1a ENSEMBL cdna:known chromosome:CEL140:II:9142304:9145082:1 gene:Y9C2UA.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9142817-9145079(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y9C2UA.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD59164 Hypothetical protein Y9C2UA.1b [Caenorhabditis elegans] emb|CAD59138.1| Hypothetical protein Y9C2UA.1b [Caenorhabditis elegans] ref|NP_872013.1| Y9C2UA.1b [Caenorhabditis elegans] 0.0
blast CAA15517 Hypothetical protein Y9C2UA.1a [Caenorhabditis elegans] ref|NP_495949.2| Y9C2UA.1a [Caenorhabditis elegans] 1.0E-173
blast CAD59164 Hypothetical protein Y9C2UA.1b [Caenorhabditis elegans] emb|CAD59138.1| Hypothetical protein Y9C2UA.1b [Caenorhabditis elegans] ref|NP_872013.1| Y9C2UA.1b [Caenorhabditis elegans] 1.0E-173
blast CAA15517 Hypothetical protein Y9C2UA.1a [Caenorhabditis elegans] ref|NP_495949.2| Y9C2UA.1a [Caenorhabditis elegans] 1.0E-172
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872013.1 7 55-77,90-108,132-154,161-183,203-225,246-268,312-334
NP_495949.2 7 15-37,44-66,91-113,120-142,162-184,205-227,271-293
Y9C2UA.1b 7 55-77,90-108,132-154,161-183,203-225,246-268,312-334
Y9C2UA.1a 7 15-37,44-66,91-113,120-142,162-184,205-227,271-293
SNAP00000006404 5 15-37,109-131,151-173,194-216,260-282
GENEFINDER00000006412 7 15-37,44-66,91-113,120-142,162-184,205-227,271-293
Sequence
Target Sequence 
>C. ELEGANS:181925_AT
atatcatatcaattccttccagttcatggatattgtctggtggtatgagccaattgatct
attcaatttggcaacatatctcatctttaccactttcaccttcatctacttcctcttctg
tctttttggaacctgcctctgctgtgcaactatgacatcaaagaagccatcctcgcgtac
cactggaacttttgctgatatgtggcttctcttcccatacggattgattccatctatcat
gtatggtccatcattcggaatgacttctgtcagttttgccatgcaacatcttcttacctg
ggttcttgaaagtggtcttctaactggcggaggtggatcatcgtccggtggtagtttcat
tgacatgaatcttttgatgcaagttgccacaaatgccatcctcgcaatgccttggttcgt
tcttctcttcccattggttcaatccattctggcactggtttgcctgagaatgttccgtga
acagttcttcttcatgatttcctgtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCATATCAATTCCTTCCAGTTC 58 21 348 Antisense
TTTGGCAACATATCTCATCTTTACC 298 665 414 Antisense
CTGCCTCTGCTGTGCAACTATGACA 107 237 480 Antisense
GACATCAAAGAAGCCATCCTCGCGT 120 371 501 Antisense
CCTCGCGTACCACTGGAACTTTTGC 684 265 518 Antisense
GCTTCTCTTCCCATACGGATTGATT 495 301 552 Antisense
GACTTCTGTCAGTTTTGCCATGCAA 619 371 609 Antisense
TGCCATGCAACATCTTCTTACCTGG 634 585 624 Antisense
GGATCATCGTCCGGTGGTAGTTTCA 689 507 682 Antisense
GCAAGTTGCCACAAATGCCATCCTC 396 321 726 Antisense
GTTCTTCTTCATGATTTCCTGTGGA 608 443 831 Antisense
Sequence Source Affymetrix Proprietary Database