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[181924_at]

Description F58E1.5 /REP_DB=WormBase Gene ID /WP=CE11380 /TR=Q9TZG9 /GB=AAC67483.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 26      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 1.5
(-3)
A 		41.1
(-0.2)
A 		34.5
(-0.7)
A 		87.6
(3)
P 		86
B 29.1
(0.7)
A 		46.2
(3)
A 		1.5
(-3)
A 		2.8
(-2.8)
A 		45
C 3.9
(-3)
A 		7.4
(-2.3)
A 		28.3
(2.1)
A 		32.4
(3)
P 		29
avr 11.5
(-3) 		31.6
(1.1) 		21.4
(-1) 		40.9
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 8
(-3)
A 		31.9
(-0.6)
A 		40.7
(0.3)
A 		43.7
(0.6)
A 		59
(2.1)
A 		67.6
(3)
P 		60
B 1.6
(-3)
A 		17.9
(-1.5)
A 		29.6
(-0.5)
A 		12.2
(-2)
A 		39.4
(0.4)
A 		68.3
(3)
P 		67
C 34.9
(-1.8)
A 		19.9
(-3)
A 		64.4
(0.4)
A 		42.5
(-1.3)
A 		38.1
(-1.6)
A 		97.6
(3)
P 		78
avr 14.8
(-3) 		23.2
(-2.2) 		44.9
(-0.1) 		32.8
(-1.3) 		45.5
(-0.1) 		77.8
(3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.6
(-3)
A 		8.9
(1.1)
A 		9
(1.1)
A 		12.8
(3)
P 		12
B 9.3
(1.9)
A 		11.4
(3)
A 		0.3
(-3)
A 		0.6
(-2.8)
A 		11
C 1.3
(-3)
A 		2.1
(-2.4)
A 		9.9
(3)
A 		5.5
(-0.1)
P 		9
avr 3.7
(-3) 		7.5
(3) 		6.4
(1.3) 		6.3
(1.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 1.5
(-3)
A 		11.3
(0.6)
A 		8.9
(-0.3)
A 		11.1
(0.5)
A 		17.8
(3)
A 		16.5
(2.5)
P 		16
B 0.6
(-3)
A 		6
(-1.7)
A 		7.2
(-1.4)
A 		3.2
(-2.4)
A 		16
(0.7)
A 		25.5
(3)
P 		25
C 12.9
(-1.5)
A 		6.1
(-3)
A 		16.4
(-0.7)
A 		8.5
(-2.5)
A 		12.3
(-1.6)
A 		32.7
(3)
P 		27
avr 5
(-3) 		7.8
(-2.2) 		10.8
(-1.3) 		7.6
(-2.2) 		15.4
(0.1) 		24.9
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181924_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4672
Sequence Type Exemplar sequence
Representative Public ID F58E1.5 NCBI
Target Description F58E1.5 /REP_DB=WormBase Gene ID /WP=CE11380 /TR=Q9TZG9 /GB=AAC67483.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061635 NCBI Caenorhabditis elegans F58E1.5 (F58E1.5) mRNA, complete cds. 11/11 None
SNAP00000040823 ENSEMBL cdna:SNAP chromosome:CEL140:II:1676419:1681976:1 11/11 None
F58E1.5 ENSEMBL cdna:known chromosome:CEL140:II:1676419:1677294:1 gene:F58E1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1676417-1677293(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E1.5
Entrez Gene 186510 Entrez gene
SwissProt Q9TZG9 EMBL-EBI
WormBase CE11380 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67482 Hypothetical protein F58E1.4 [Caenorhabditis elegans] ref|NP_494038.1| F58E1.4 [Caenorhabditis elegans] 0.0
blast AAC67483 Hypothetical protein F58E1.5 [Caenorhabditis elegans] ref|NP_494036.1| F58E1.5 [Caenorhabditis elegans] 1.0E-150
blast AAC67483 Hypothetical protein F58E1.5 [Caenorhabditis elegans] ref|NP_494036.1| F58E1.5 [Caenorhabditis elegans] 1.0E-137
blast AAB66213 Hypothetical protein F45C12.16 [Caenorhabditis elegans] ref|NP_494063.1| F45C12.16 [Caenorhabditis elegans] 1.0E-114
blast AAC67486 Hypothetical protein F58E1.9 [Caenorhabditis elegans] ref|NP_494042.1| F58E1.9 [Caenorhabditis elegans] 4.0E-33
blast CAB60509 Hypothetical protein Y56A3A.15 [Caenorhabditis elegans] ref|NP_499547.1| Y56A3A.15 [Caenorhabditis elegans] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.0E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.3E-12
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.7E-13
Sequence
Target Sequence 
>C. ELEGANS:181924_AT
gaatcgaaaaatcgccctacgacaaacgatataaaaagctttatttaccaggattcactg
aaaaacaatggattggccatattgttcgtgtcttctctcacaacaatggaatagttttgt
cactcaaacctttgttcagtttcaggagaggaaagattaaagaaactgttgaacttttca
aagggcttaatgtcagaaaactggtaaaccatgattctcgaattgaaaatcgccagcttc
tcaaattgtttcctacaccaaattatttgaggttatcaaatgattatatttgtgaatcaa
tccttgttcagaactttgagacgctagaacttttggagaaaaaactgtcactaaacgata
ttctaactacaaattgcacaaatctggaaatccactaccaatctctgtccgacagaaacc
tgaacctctttatgaagcattggatcagaggatccaaccccaaccttcaatcaatatgtg
tcaacttttcaagagaaatgcgatcttttggagccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGAAAAATCGCCCTACGACAA 475 329 260 Antisense
GATTGGCCATATTGTTCGTGTCTTC 675 435 330 Antisense
GTCACTCAAACCTTTGTTCAGTTTC 268 463 378 Antisense
ACTGGTAAACCATGATTCTCGAATT 204 97 459 Antisense
GAAAATCGCCAGCTTCTCAAATTGT 30 355 484 Antisense
GCTTCTCAAATTGTTTCCTACACCA 245 305 495 Antisense
GAATCAATCCTTGTTCAGAACTTTG 253 327 553 Antisense
TGGAAATCCACTACCAATCTCTGTC 20 549 644 Antisense
GACAGAAACCTGAACCTCTTTATGA 175 367 670 Antisense
CAACCCCAACCTTCAATCAATATGT 590 187 714 Antisense
GAGAAATGCGATCTTTTGGAGCCGA 31 393 752 Antisense
Sequence Source Affymetrix Proprietary Database