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[181923_at]

Description AH6.2 /REP_DB=WormBase Gene ID /WP=CE01456 /TR=SW:Q09201 /GB=CAA88076.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 16      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 40
(-1.1)
A 		16.4
(-3)
A 		68.8
(1.3)
A 		89.6
(3)
A 		73
B 28.7
(-0.7)
A 		59.1
(3)
A 		56.1
(2.6)
A 		9.4
(-3)
A 		50
C 14.7
(-2.3)
A 		18
(-2)
A 		6.9
(-3)
A 		71.7
(3)
A 		65
avr 27.8
(-3) 		31.2
(-2.3) 		43.9
(0.3) 		56.9
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 67.9
(1.2)
A 		31.2
(-3)
A 		35.2
(-2.5)
A 		45
(-1.4)
A 		77.4
(2.3)
P 		83.6
(3)
P 		52
B 65.6
(1)
A 		6.7
(-3)
A 		34.5
(-1.1)
A 		40
(-0.7)
A 		95.4
(3)
P 		77.7
(1.8)
P 		89
C 22.2
(-1.9)
A 		4.3
(-3)
A 		23
(-1.8)
A 		50.3
(-0.1)
A 		100.8
(3)
A 		63
(0.6)
P 		97
avr 51.9
(-0.1) 		14.1
(-3) 		30.9
(-1.7) 		45.1
(-0.6) 		91.2
(3) 		74.8
(1.7) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 14.6
(1.6)
A 		3.6
(-3)
A 		18
(3)
A 		13.1
(1)
A 		14
B 9.2
(0.4)
A 		14.6
(3)
A 		13
(2.2)
A 		2
(-3)
A 		13
C 4.9
(-1.5)
A 		5.2
(-1.3)
A 		2.4
(-3)
A 		12.1
(3)
A 		10
avr 9.6
(0.3) 		7.8
(-3) 		11.1
(3) 		9.1
(-0.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 12.5
(-1.2)
A 		11.1
(-1.7)
A 		7.7
(-3)
A 		11.4
(-1.6)
A 		23.4
(3)
P 		20.3
(1.8)
P 		16
B 22.8
(0.4)
A 		2.2
(-3)
A 		8.4
(-2)
A 		10.6
(-1.6)
A 		38.8
(3)
P 		29
(1.4)
P 		37
C 8.2
(-1.7)
A 		1.3
(-3)
A 		5.8
(-2.1)
A 		10.1
(-1.3)
A 		32.6
(3)
A 		21.1
(0.8)
P 		31
avr 14.5
(-0.8) 		4.9
(-3) 		7.3
(-2.5) 		10.7
(-1.7) 		31.6
(3) 		23.5
(1.2) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181923_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2889
Sequence Type Exemplar sequence
Representative Public ID AH6.2 NCBI
Target Description AH6.2 /REP_DB=WormBase Gene ID /WP=CE01456 /TR=SW:Q09201 /GB=CAA88076.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063639(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063639 NCBI Caenorhabditis elegans AH6.2 (AH6.2) mRNA, complete cds. 11/11 None
SNAP00000033430 ENSEMBL cdna:SNAP chromosome:CEL140:II:9517533:9518787:-1 11/11 None
GENEFINDER00000033445 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9517533:9518787:-1 11/11 None
AH6.2 ENSEMBL cdna:known chromosome:CEL140:II:9517533:9518787:-1 gene:AH6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9517529-9518784(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl AH6.2
Entrez Gene 181807 Entrez gene
SwissProt Q09201 EMBL-EBI
WormBase CE01456 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8324 cation transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88076 Hypothetical protein AH6.2 [Caenorhabditis elegans] ref|NP_496040.1| AH6.2 [Caenorhabditis elegans] sp|Q09201|YP22_CAEEL Hypothetical protein AH6.2 in chromosome II 1.0E-172
blast CAE57824 Hypothetical protein CBG00848 [Caenorhabditis briggsae] 1.0E-138
blast CAE66303 Hypothetical protein CBG11553 [Caenorhabditis briggsae] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR004686 EMBL-EBI Tricarboxylate/iron carrier 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496040.1 4 150-167,177-196,232-254,272-294
AH6.2 4 150-167,177-196,232-254,272-294
SNAP00000033430 4 150-167,177-196,232-254,272-294
GENEFINDER00000033445 4 150-167,177-196,232-254,272-294
Sequence
Target Sequence 
>C. ELEGANS:181923_AT
gtattctcacactggttcaatcaatcctttaacgcagttgtcaactatacgaatagaagt
ggaaatagtaaagctaccaacgaacgtctcttcgtgtcttattgctgtgcaaccagtgga
gcgatgactgtagcacttggacttaataaaatggtcaaaaatagtcacggtcttgctgct
cgtctagtaccatttgctgcaatcgcattggcaaatgcaatcaatattccaatgatgaga
agcaacgaagccagtgaaggaatggaattgaaagacgaaaatgatcaacttgtcggcaaa
tctcagaaaatggctgcattgtcaattgcccaggttactttgagtagaattgcaatggca
atgccatatatggtaatgacaccgatcatcatgaaccgcatcactcgtaccgcatactac
cgtacacgcccttggatgcaaaaatactcggagattccaatccagactttgattgccggc
atcggactctatttcaccactccactgtgctgtgccttgttccctcagaaaagtagcgtg
gaagttgagaagctggagtcaagtgtgcaaaaagaaatcatgtcacgtccgaatcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTCTCACACTGGTTCAATCAAT 339 453 373 Antisense
AGCTACCAACGAACGTCTCTTCGTG 96 77 444 Antisense
TCTCTTCGTGTCTTATTGCTGTGCA 415 613 459 Antisense
GAGCGATGACTGTAGCACTTGGACT 207 387 491 Antisense
AAAATAGTCACGGTCTTGCTGCTCG 453 133 530 Antisense
TGCTCGTCTAGTACCATTTGCTGCA 229 581 549 Antisense
ATGGCTGCATTGTCAATTGCCCAGG 397 51 682 Antisense
TCATCATGAACCGCATCACTCGTAC 193 621 758 Antisense
GACTTTGATTGCCGGCATCGGACTC 422 371 837 Antisense
TGTGCCTTGTTCCCTCAGAAAAGTA 561 555 883 Antisense
GAAATCATGTCACGTCCGAATCCTC 395 363 946 Antisense
Sequence Source Affymetrix Proprietary Database