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[181921_at]

Description F22D6.14 /REP_DB=WormBase Gene ID /WP=CE23680 /TR=Q9U3I1 /GB=CAB54231.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 15.5
(-0.4)
A 		34.2
(3)
A 		1.3
(-3)
A 		1.2
(-3)
A 		33
B 36.5
(3)
A 		5.3
(-3)
A 		33.7
(2.5)
A 		29.8
(1.7)
A 		31
C 6.3
(-3)
A 		11.9
(-2.6)
A 		15.7
(-2.4)
A 		96.6
(3)
P 		90
avr 19.4
(-2.4) 		17.1
(-3) 		16.9
(-3) 		42.5
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 37.8
(3)
A 		14
(-2.5)
A 		11.9
(-3)
A 		13.3
(-2.7)
A 		33.6
(2)
A 		31
(1.4)
A 		26
B 14.8
(0.4)
A 		16.9
(1)
A 		4.2
(-3)
A 		11.1
(-0.8)
A 		14.7
(0.3)
A 		23.1
(3)
P 		19
C 23
(-0.1)
A 		2.3
(-3)
A 		12.7
(-1.5)
A 		45.3
(3)
A 		27
(0.4)
A 		31.1
(1)
P 		43
avr 25.2
(2) 		11.1
(-2.5) 		9.6
(-3) 		23.2
(1.3) 		25.1
(1.9) 		28.4
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.6
(1.5)
A 		7.4
(3)
A 		0.3
(-2.9)
A 		0.2
(-3)
A 		7
B 11.6
(3)
A 		1.3
(-3)
A 		7.8
(0.8)
A 		6.4
(-0)
A 		10
C 2.1
(-3)
A 		3.4
(-2.5)
A 		5.5
(-1.6)
A 		16.3
(3)
P 		14
avr 6.4
(1) 		4
(-3) 		4.5
(-2.2) 		7.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7
(0.5)
A 		5
(-1.1)
A 		2.6
(-3)
A 		3.4
(-2.4)
A 		10.2
(3)
A 		7.6
(0.9)
A 		8
B 5.1
(0.2)
A 		5.6
(0.6)
A 		1
(-3)
A 		2.9
(-1.5)
A 		6
(0.9)
A 		8.6
(3)
P 		8
C 8.5
(1.8)
A 		0.7
(-3)
A 		3.2
(-1.5)
A 		9.1
(2.2)
A 		8.7
(1.9)
A 		10.4
(3)
P 		10
avr 6.9
(1.2) 		3.8
(-1.6) 		2.3
(-3) 		5.1
(-0.5) 		8.3
(2.5) 		8.9
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181921_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1723
Sequence Type Exemplar sequence
Representative Public ID F22D6.14 NCBI
Target Description F22D6.14 /REP_DB=WormBase Gene ID /WP=CE23680 /TR=Q9U3I1 /GB=CAB54231.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059609(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059609 NCBI Caenorhabditis elegans F22D6.14 (F22D6.14) mRNA, complete cds. 11/11 None
F22D6.14 ENSEMBL cdna:known chromosome:CEL140:I:7106781:7107390:1 gene:F22D6.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7106711-7107321(+) 95.18 100.0
Public Domain and Genome References
Gene Title
Ensembl F22D6.14
Entrez Gene 184830 Entrez gene
SwissProt Q9U3I1 EMBL-EBI
WormBase CE23680 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54231 Hypothetical protein F22D6.14 [Caenorhabditis elegans] ref|NP_492010.1| F22D6.14 [Caenorhabditis elegans] 3.0E-98
blast CAB54188 Hypothetical protein B0393.8 [Caenorhabditis elegans] emb|CAB54318.2| Hypothetical protein VB0393L.2 [Caenorhabditis elegans] ref|NP_497976.2| VB0393L.2 [Caenorhabditis elegans] ref|NP_497977.2| B0393.8 [Caenorhabditis elegans] 2.0E-43
blast AAA81692 Hypothetical protein F31E3.6 [Caenorhabditis elegans] ref|NP_498526.1| F31E3.6 [Caenorhabditis elegans] 9.0E-42
Sequence
Target Sequence 
>C. ELEGANS:181921_AT
atagcttttcacaatctttttcgatggtactgtagatggaacgatgaatttcaggtcgat
gagcatttggatcatttttgtcgtaaagacaaggctcaggaagtatttaacgtctcgtgg
ctcgtgctgaaattcaatgtttttaaattatacactcagaaatttctttacacgtacagc
ttcataaccatcttcaggcttagctttcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGCTTTTCACAATCTTTTTCGAT 129 23 292 Antisense
TCACAATCTTTTTCGATGGTACTGT 519 627 300 Antisense
GATGGTACTGTAGATGGAACGATGA 335 407 314 Antisense
GAATTTCAGGTCGATGAGCATTTGG 63 325 337 Antisense
ATTTGGATCATTTTTGTCGTAAAGA 24 19 356 Antisense
GTCGTAAAGACAAGGCTCAGGAAGT 348 471 371 Antisense
GGAAGTATTTAACGTCTCGTGGCTC 617 529 390 Antisense
TCTCGTGGCTCGTGCTGAAATTCAA 453 611 404 Antisense
GAAATTTCTTTACACGTACAGCTTC 645 359 450 Antisense
CGTACAGCTTCATAACCATCTTCAG 249 247 464 Antisense
AACCATCTTCAGGCTTAGCTTTCGC 485 147 477 Antisense
Sequence Source Affymetrix Proprietary Database