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[181920_at]

Description F58E1.4 /REP_DB=WormBase Gene ID /WP=CE11378 /TR=Q9TZG7 /GB=AAC67482.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 30.3
(-3)
A 		43.2
(-1.1)
A 		30.8
(-2.9)
A 		70.6
(3)
A 		40
B 43.5
(2.3)
A 		48.6
(3)
A 		6.2
(-3)
A 		31.2
(0.5)
A 		42
C 38.7
(3)
A 		27.6
(1.1)
A 		18.4
(-0.4)
A 		3.1
(-3)
A 		36
avr 37.5
(2.4) 		39.8
(3) 		18.5
(-3) 		35
(1.6) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 42.6
(3)
A 		35.4
(1.8)
A 		25.2
(0.2)
A 		7.6
(-2.7)
A 		5.7
(-3)
A 		11.9
(-2)
A 		37
B 5
(-3)
A 		22.7
(-0.5)
A 		5.4
(-2.9)
A 		46.8
(3)
A 		31.4
(0.8)
A 		19.8
(-0.9)
A 		42
C 23
(1.5)
A 		29.2
(3)
A 		6.5
(-2.7)
A 		7.1
(-2.5)
A 		5.1
(-3)
A 		5.9
(-2.8)
A 		24
avr 23.5
(1) 		29.1
(3) 		12.4
(-3) 		20.5
(-0.1) 		14.1
(-2.4) 		12.5
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11
(3)
A 		9.4
(-0.3)
A 		8.1
(-3)
A 		10.3
(1.6)
A 		3
B 13.9
(3)
A 		12
(2.1)
A 		1.4
(-3)
A 		6.6
(-0.5)
A 		13
C 12.8
(3)
A 		7.9
(0.6)
A 		6.4
(-0.1)
A 		0.5
(-3)
A 		12
avr 12.6
(3) 		9.8
(0.7) 		5.3
(-3) 		5.8
(-2.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.8
(0.4)
A 		12.6
(3)
A 		5.5
(-0.9)
A 		1.9
(-2.9)
A 		1.7
(-3)
A 		2.9
(-2.3)
A 		11
B 1.7
(-2.8)
A 		7.5
(0.2)
A 		1.3
(-3)
A 		12.4
(2.8)
A 		12.8
(3)
A 		7.4
(0.2)
A 		12
C 8.5
(2.7)
A 		8.9
(3)
A 		1.7
(-2.8)
A 		1.4
(-3)
A 		1.7
(-2.8)
A 		2
(-2.5)
A 		8
avr 6
(-0.2) 		9.7
(3) 		2.8
(-3) 		5.2
(-0.9) 		5.4
(-0.7) 		4.1
(-1.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181920_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5052
Sequence Type Exemplar sequence
Representative Public ID F58E1.4 NCBI
Target Description F58E1.4 /REP_DB=WormBase Gene ID /WP=CE11378 /TR=Q9TZG7 /GB=AAC67482.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061637(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061637 NCBI Caenorhabditis elegans F58E1.4 (F58E1.4) mRNA, complete cds. 11/11 None
GENEFINDER00000040842 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1679384:1682460:1 11/11 None
F58E1.4 ENSEMBL cdna:known chromosome:CEL140:II:1679384:1682046:1 gene:F58E1.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040823 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1679382-1682045(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E1.4
Entrez Gene 186509 Entrez gene
SwissProt Q9TZG7 EMBL-EBI
WormBase CE11378 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC67482 Hypothetical protein F58E1.4 [Caenorhabditis elegans] ref|NP_494038.1| F58E1.4 [Caenorhabditis elegans] 0.0
blast AAB66213 Hypothetical protein F45C12.16 [Caenorhabditis elegans] ref|NP_494063.1| F45C12.16 [Caenorhabditis elegans] 1.0E-164
blast AAB66213 Hypothetical protein F45C12.16 [Caenorhabditis elegans] ref|NP_494063.1| F45C12.16 [Caenorhabditis elegans] 1.0E-159
blast AAF39998 Hypothetical protein ZK355.1 [Caenorhabditis elegans] ref|NP_494403.1| ZK355.1 [Caenorhabditis elegans] 2.0E-98
blast AAF39998 Hypothetical protein ZK355.1 [Caenorhabditis elegans] ref|NP_494403.1| ZK355.1 [Caenorhabditis elegans] 4.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.3E-12
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.6E-29
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.3E-12
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.6E-29
Sequence
Target Sequence 
>C. ELEGANS:181920_AT
aatttcctttacgacaatcttgccggcggtcaattcgtcgcgaatttcgagaacttgcac
cccgatttttgcgtgacctacggggaaatgttccttttcatgcaccaaaatgtatatttt
aaaaacttgcatgcaacctattgcgagggcgagaaggaacaatttgttgaaactttactt
gagaagtatgagatttgctggctcaccaccaccacgacgttgaaaactttaaaatcaaat
tgtacagttatcagtggagatttgaagattgaaagtggcgatgaggaatatgtatctaaa
ttggaaagtttgaaatatttattcggatccattttgatccacaacacaggtttttcaaaa
aatcgatattcaccaaacttgagctgtattgctgttatgaatgacgaacccgctattaaa
attgtatctaatttgaacctcacatatgcatttttgcccaaaattgagaatataatcaca
aagcaccaaaggacagttgtagttcacaacaaccctcaattatcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTCCTTTACGACAATCTTGCCG 40 175 817 Antisense
CAATCTTGCCGGCGGTCAATTCGTC 558 177 831 Antisense
AATTTCGAGAACTTGCACCCCGATT 159 175 859 Antisense
GCGTGACCTACGGGGAAATGTTCCT 157 293 887 Antisense
AAATGTTCCTTTTCATGCACCAAAA 209 119 902 Antisense
GCATGCAACCTATTGCGAGGGCGAG 285 311 945 Antisense
TATGAGATTTGCTGGCTCACCACCA 62 657 1003 Antisense
ATCCATTTTGATCCACAACACAGGT 393 39 1143 Antisense
GTTATGAATGACGAACCCGCTATTA 470 445 1210 Antisense
GAACCTCACATATGCATTTTTGCCC 62 347 1251 Antisense
TCACAACAACCCTCAATTATCTTCA 340 627 1320 Antisense
Sequence Source Affymetrix Proprietary Database