[Home] | [Total List]

[181918_at]

Description K07H8.3 /REP_DB=WormBase Gene ID /WP=CE18023 /TR=O61219 /GB=AAC04428.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 56      6grp_total > 74      4grp_total > 49      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1856
1 2 3 4 range
A 1624.3
(-2.9)
P 		3418.3
(3)
P 		2834.2
(1.1)
P 		1584.7
(-3)
P 		1834
B 1931
(-2.4)
P 		3061.2
(2.6)
P 		3161.8
(3)
P 		1786
(-3)
P 		1376
C 1807.4
(-2)
P 		2730.8
(1.6)
P 		3085.8
(3)
P 		1562.2
(-3)
P 		1524
avr 1787.6
(-2.4) 		3070.1
(3) 		3027.3
(2.8) 		1644.3
(-3) 		1426

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1429
1 2 3 4 5 6 range
A 2034.3
(-1.5)
P 		1928.1
(-3)
P 		2249
(1.5)
P 		2099.6
(-0.6)
P 		2358.3
(3)
P 		2093.1
(-0.7)
P 		430
B 1809.3
(-3)
P 		1963.9
(-1.8)
P 		2586.1
(3)
P 		2411.1
(1.6)
P 		2170
(-0.2)
P 		2467
(2.1)
P 		777
C 1524
(-3)
P 		1918.4
(-1.3)
P 		2229.9
(-0)
P 		2952.9
(3)
P 		1887.6
(-1.5)
P 		2538.1
(1.3)
P 		1429
avr 1789.2
(-3) 		1936.8
(-1.7) 		2355
(1.9) 		2487.9
(3) 		2138.6
(0) 		2366.1
(2) 		699
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 844
1 2 3 4 range
A 591.4
(1.2)
P 		742
(3)
P 		740.9
(3)
P 		232
(-3)
P 		510
B 615.8
(0.8)
P 		756.1
(3)
P 		732.7
(2.6)
P 		380.6
(-3)
P 		376
C 598.3
(-0.5)
P 		785.1
(0.9)
P 		1075.5
(3)
P 		263.4
(-3)
P 		812
avr 601.8
(0.3) 		761.1
(2) 		849.7
(3) 		292
(-3) 		558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 545
1 2 3 4 5 6 range
A 375
(-3)
P 		685.7
(2.5)
P 		489.8
(-1)
P 		532.5
(-0.2)
P 		711.6
(3)
P 		509.6
(-0.6)
P 		337
B 629.6
(-3)
P 		653.7
(-2.5)
P 		628
(-3)
P 		638.6
(-2.8)
P 		881.6
(2.2)
P 		919.9
(3)
P 		292
C 564.9
(-3)
P 		585.4
(-2.6)
P 		567.5
(-2.9)
P 		593.8
(-2.4)
P 		610.8
(-2)
P 		849.6
(3)
P 		285
avr 523.2
(-3) 		641.6
(0) 		561.8
(-2) 		588.3
(-1.3) 		734.7
(2.4) 		759.7
(3) 		237
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181918_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10107
Sequence Type Exemplar sequence
Representative Public ID K07H8.3 NCBI
Target Description K07H8.3 /REP_DB=WormBase Gene ID /WP=CE18023 /TR=O61219 /GB=AAC04428.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068991(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068991 NCBI Caenorhabditis elegans K07H8.3 (K07H8.3) mRNA, complete cds. 11/11 None
SNAP00000006920 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8290259:8291282:1 11/11 None
GENEFINDER00000006930 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8290259:8291282:1 11/11 None
K07H8.3 ENSEMBL cdna:known chromosome:CEL140:IV:8290255:8291472:1 gene:K07H8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8290264-8291288(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07H8.3
Entrez Gene 177622 Entrez gene
SwissProt O61219 EMBL-EBI
WormBase CE18023 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250226_AT GCN5-related N-acetyltransferase, putative at
CANINE_2:CFA.16849.2.S1_S_AT similar to N-acetyltransferase, homolog of S. cerevisiae ARD1 cfa
DROSOPHILA_2:1630312_S_AT dm
DROSGENOME1:153956_AT dm
HG-FOCUS:203025_AT ARD1 homolog A, N-acetyltransferase (S. cerevisiae) hs
HG-U133A:203025_AT ARD1 homolog A, N-acetyltransferase (S. cerevisiae) hs
HG-U133_PLUS_2:203025_AT ARD1 homolog A, N-acetyltransferase (S. cerevisiae) hs
HG-U133A_2:203025_AT ARD1 homolog A, N-acetyltransferase (S. cerevisiae) hs
HUGENEFL:X77588_S_AT ARD1 homolog A, N-acetyltransferase (S. cerevisiae) hs
U133_X3P:G10835056_3P_AT ARD1 homolog A, N-acetyltransferase (S. cerevisiae) hs
HG-U95AV2:31873_AT ARD1 homolog A, N-acetyltransferase (S. cerevisiae) hs
MU11KSUBA:AA616085_AT N-acetyltransferase ARD1 homolog (S. cerevisiae) mm
MG-U74AV2:100575_AT N-acetyltransferase ARD1 homolog (S. cerevisiae) mm
MG-U74AV2:161589_AT N-acetyltransferase ARD1 homolog (S. cerevisiae) mm
MOE430A:1417118_A_AT N-acetyltransferase ARD1 homolog (S. cerevisiae) mm
MOUSE430A_2:1417118_A_AT N-acetyltransferase ARD1 homolog (S. cerevisiae) mm
MOUSE430_2:1417118_A_AT N-acetyltransferase ARD1 homolog (S. cerevisiae) mm
MU19KSUBB:TC26853_AT N-acetyltransferase ARD1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:25543 IMAGE:3673739) mm
MU19KSUBB:TC26853_G_AT N-acetyltransferase ARD1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:25543 IMAGE:3673739) mm
MU19KSUBC:TC35974_S_AT N-acetyltransferase ARD1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:25543 IMAGE:3673739) mm
RG-U34C:RC_AI231290_AT similar to N-acetyltransferase ARD1 rn
RAE230B:1383922_A_AT similar to N-acetyltransferase ARD1 rn
RAT230_2:1383922_A_AT similar to N-acetyltransferase ARD1 rn
RAE230B:1384340_A_AT similar to N-acetyltransferase ARD1 rn
RAT230_2:1384340_A_AT similar to N-acetyltransferase ARD1 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8080 N-acetyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC04428 Hypothetical protein K07H8.3 [Caenorhabditis elegans] ref|NP_501392.1| K07H8.3 [Caenorhabditis elegans] 1.0E-95
blast CAE58448 Hypothetical protein CBG01585 [Caenorhabditis briggsae] 7.0E-93
blast CAG07449 unnamed protein product [Tetraodon nigroviridis] 2.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 6.2E-22
Sequence
Target Sequence 
>C. ELEGANS:181918_AT
aatgcgaatcttatgtgccttccagagaattatcaaatgaaatactacttctatcacgct
ctttcttggccgcagctctcttatattgctgaagatcacaagggaaatgttgttggatat
gttctcgccaaaatggaagaagacccaggagaggagccacatggtcatatcacctctttg
gccgtcaaaagatcttacagacgtctgggattggctaataaaatgatggatcagaccgca
agagccatggtcgaaacctacaacgctaaatacgtatcgcttcatgttcgtgtatcaaac
cgagccgcattgaatctatacaagaacacactgaaattcgaaattgtggatacagagcca
aaatattacgcggatggagaagatgcatacgctatgcgtcgcgatctcgcaaaatgggca
gaagaacggaacatcgagccagcagatcgagaggcctataccactgcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCGAATCTTATGTGCCTTCCAG 366 167 58 Antisense
TGAAATACTACTTCTATCACGCTCT 216 573 95 Antisense
TGGCCGCAGCTCTCTTATATTGCTG 175 545 124 Antisense
AGGAGCCACATGGTCATATCACCTC 590 55 209 Antisense
TATCACCTCTTTGGCCGTCAAAAGA 652 655 225 Antisense
GAGCCATGGTCGAAACCTACAACGC 399 385 299 Antisense
GTATCGCTTCATGTTCGTGTATCAA 256 455 331 Antisense
AAACCGAGCCGCATTGAATCTATAC 535 125 354 Antisense
TGCATACGCTATGCGTCGCGATCTC 427 579 441 Antisense
GAACGGAACATCGAGCCAGCAGATC 280 349 481 Antisense
ATCGAGAGGCCTATACCACTGCAAA 401 35 503 Antisense
Sequence Source Affymetrix Proprietary Database