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[181917_at]

Description ZC239.2 /REP_DB=WormBase Gene ID /WP=CE15114 /TR=P91560 /GB=AAB37943.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 0      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 12.6
(-2)
A 		5.1
(-3)
A 		52.1
(3)
A 		22.9
(-0.7)
A 		47
B 49.3
(3)
A 		48.7
(2.7)
A 		38.4
(-3)
A 		42.1
(-1)
A 		11
C 25.4
(0.5)
A 		23.8
(0.2)
A 		8.4
(-3)
A 		37.6
(3)
A 		29
avr 29.1
(-0.7) 		25.9
(-3) 		33
(2.1) 		34.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 33.9
(3)
A 		8.3
(-2.6)
A 		9
(-2.5)
A 		9.2
(-2.4)
A 		17.4
(-0.6)
A 		6.6
(-3)
A 		27
B 31
(2.4)
A 		32.9
(3)
A 		12.2
(-3)
A 		12.9
(-2.8)
A 		17.7
(-1.4)
A 		23.7
(0.3)
A 		21
C 9
(-3)
A 		25.8
(3)
A 		12.3
(-1.8)
A 		15.4
(-0.7)
A 		16.7
(-0.3)
A 		23.2
(2.1)
A 		17
avr 24.6
(3) 		22.3
(2) 		11.2
(-3) 		12.5
(-2.4) 		17.3
(-0.3) 		17.8
(-0) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.6
(-1.3)
A 		1.1
(-3)
A 		13.6
(3)
A 		3.3
(-1.9)
A 		13
B 15.7
(3)
A 		12
(-0.3)
A 		8.9
(-3)
A 		9
(-2.9)
A 		7
C 8.4
(3)
A 		6.8
(1.3)
A 		2.9
(-3)
A 		6.3
(0.7)
A 		6
avr 9.6
(3) 		6.6
(-2.3) 		8.5
(1.1) 		6.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6.2
(3)
A 		3
(-1.2)
A 		2
(-2.5)
A 		2.3
(-2.1)
A 		5.2
(1.7)
A 		1.6
(-3)
A 		5
B 10.8
(2.9)
A 		10.9
(3)
A 		3
(-3)
A 		3.4
(-2.7)
A 		7.2
(0.2)
A 		8.8
(1.4)
A 		8
C 3.4
(-2.6)
A 		7.9
(3)
A 		3.1
(-3)
A 		3.1
(-3)
A 		5.4
(-0.1)
A 		7.8
(2.9)
A 		5
avr 6.8
(2.3) 		7.3
(3) 		2.7
(-3) 		2.9
(-2.7) 		5.9
(1.2) 		6.1
(1.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181917_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5378
Sequence Type Exemplar sequence
Representative Public ID ZC239.2 NCBI
Target Description ZC239.2 /REP_DB=WormBase Gene ID /WP=CE15114 /TR=P91560 /GB=AAB37943.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062077(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062077 NCBI Caenorhabditis elegans ZC239.2 (ZC239.2) mRNA, complete cds. 11/11 None
GENEFINDER00000024313 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3216076:3219272:1 9/11 None
ZC239.2 ENSEMBL cdna:known chromosome:CEL140:II:3217902:3218985:1 gene:ZC239.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024296 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3217900-3218984(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC239.2
Entrez Gene 191119 Entrez gene
SwissProt P91560 EMBL-EBI
WormBase CE15114 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37943 Hypothetical protein ZC239.2 [Caenorhabditis elegans] ref|NP_494478.1| ZC239.2 [Caenorhabditis elegans] 1.0E-116
blast NP_494317 F22E5.11 [Caenorhabditis elegans] gb|AAB66175.2| Hypothetical protein F22E5.11 [Caenorhabditis elegans] 5.0E-99
blast AAB37943 Hypothetical protein ZC239.2 [Caenorhabditis elegans] ref|NP_494478.1| ZC239.2 [Caenorhabditis elegans] 6.0E-96
blast NP_494317 F22E5.11 [Caenorhabditis elegans] gb|AAB66175.2| Hypothetical protein F22E5.11 [Caenorhabditis elegans] 4.0E-67
blast AAB37942 Hypothetical protein ZC239.3 [Caenorhabditis elegans] ref|NP_494477.1| ZC239.3 [Caenorhabditis elegans] 4.0E-63
blast AAB37945 Hypothetical protein ZC239.6 [Caenorhabditis elegans] ref|NP_494474.2| ZC239.6 [Caenorhabditis elegans] 2.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.0E-16
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 7.2E-39
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.6E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024313 1 183-205
Sequence
Target Sequence 
>C. ELEGANS:181917_AT
ccgcctcattcctcatgttataatatctccccaaagcaccttgaacttgagtttgctttg
aaaaatatttcgcctacgtctccaattttcatcgatcgtccctacaaacactttgggacc
attctcaactttttgagagatggagacgtgattcttcccaattctatggagagcctcaaa
gaacttccccgagaagctatcatttatgaattgacagggttgattggaaaatgccaagag
gcgattgcaagattgggtggagagccaacaacagtgtctctgtctaaaatcgagcaaaat
gcaacaccaccaactattggagatcctgtaacaagttcatcaggcgacacagattcacct
cagatccttgaacagcctgacaacaacgagattcaaaaaagctggatacgcgaacgaata
ttgaacatagttaattctactcactggttgatttcgcaatgccgagagtttctcgatgcg
gcggaagatgcactcctctttgtggaaggaaacattgaggtgatatcttcaaccattggc
aatatcatccgactccttcagtcagctaggcagtttcgcatcttttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCCTCATTCCTCATGTTATAATA 181 263 22 Antisense
GTTATAATATCTCCCCAAAGCACCT 628 447 38 Antisense
GAAAAATATTTCGCCTACGTCTCCA 144 353 81 Antisense
CTACGTCTCCAATTTTCATCGATCG 488 225 95 Antisense
TCAGGCGACACAGATTCACCTCAGA 306 623 361 Antisense
TCACCTCAGATCCTTGAACAGCCTG 98 627 376 Antisense
AATTCTACTCACTGGTTGATTTCGC 270 177 454 Antisense
AGAGTTTCTCGATGCGGCGGAAGAT 412 69 486 Antisense
CCATTGGCAATATCATCCGACTCCT 299 269 554 Antisense
GACTCCTTCAGTCAGCTAGGCAGTT 610 373 572 Antisense
AGCTAGGCAGTTTCGCATCTTTTAT 567 79 585 Antisense
Sequence Source Affymetrix Proprietary Database