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[181916_at]

Description Y40B1B.3 /REP_DB=WormBase Gene ID /WP=CE20237 /TR=Q9XWP5 /GB=CAA21605.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 10      6grp_cgc > 28      6grp_cgc_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 6.8
(-2.4)
A 		30.3
(1.2)
A 		3.1
(-3)
A 		42.2
(3)
A 		39
B 13.7
(-3)
A 		18.2
(-2.6)
A 		19.5
(-2.5)
A 		80.3
(3)
P 		67
C 6.4
(-2.2)
A 		4.3
(-2.7)
A 		2.9
(-3)
A 		29.8
(3)
A 		27
avr 9
(-2.9) 		17.6
(-1.7) 		8.5
(-3) 		50.8
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 25.8
(-0.6)
A 		22.7
(-0.9)
A 		4.4
(-3)
A 		6.3
(-2.8)
A 		8.8
(-2.5)
A 		57.2
(3)
A 		53
B 27.2
(-1.6)
A 		23.4
(-1.8)
A 		2.4
(-3)
A 		5.2
(-2.8)
A 		5.7
(-2.8)
A 		110.8
(3)
P 		108
C 25.3
(-1)
A 		7.4
(-2.5)
A 		1.9
(-3)
A 		9
(-2.4)
A 		19.7
(-1.5)
A 		70.9
(3)
P 		69
avr 26.1
(-1.2) 		17.8
(-1.8) 		2.9
(-3) 		6.8
(-2.7) 		11.4
(-2.3) 		79.6
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.5
(-1.2)
A 		6.6
(3)
A 		0.8
(-3)
A 		6.2
(2.6)
A 		6
B 4.4
(-3)
A 		4.5
(-3)
A 		4.5
(-3)
A 		17.1
(3)
P 		13
C 2.1
(-1.4)
A 		1.2
(-2.7)
A 		1
(-3)
A 		5
(3)
A 		4
avr 3
(-2.3) 		4.1
(-1.4) 		2.1
(-3) 		9.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 4.8
(-1.2)
A 		8.1
(0.3)
A 		0.9
(-3)
A 		1.6
(-2.7)
A 		2.6
(-2.2)
A 		13.9
(3)
A 		13
B 9.5
(-1.7)
A 		7.8
(-1.9)
A 		0.6
(-3)
A 		1.4
(-2.9)
A 		2.3
(-2.7)
A 		41.3
(3)
P 		41
C 9.4
(-0.7)
A 		2.2
(-2.6)
A 		0.5
(-3)
A 		1.8
(-2.7)
A 		6.4
(-1.5)
A 		23.7
(3)
P 		23
avr 7.9
(-1.3) 		6
(-1.8) 		0.7
(-3) 		1.6
(-2.8) 		3.8
(-2.3) 		26.3
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181916_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.383
Sequence Type Exemplar sequence
Representative Public ID Y40B1B.3 NCBI
Target Description Y40B1B.3 /REP_DB=WormBase Gene ID /WP=CE20237 /TR=Q9XWP5 /GB=CAA21605.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060961(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060961 NCBI Caenorhabditis elegans Y40B1B.3 (Y40B1B.3) mRNA, complete cds. 11/11 None
SNAP00000004544 ENSEMBL cdna:SNAP chromosome:CEL140:I:13429596:13433241:-1 11/11 None
Y40B1B.3 ENSEMBL cdna:known chromosome:CEL140:I:13432150:13433241:-1 gene:Y40B1B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13432080-13433172(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40B1B.3
Entrez Gene 189784 Entrez gene
SwissProt Q9XWP5 EMBL-EBI
WormBase CE20237 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21605 Hypothetical protein Y40B1B.3 [Caenorhabditis elegans] ref|NP_493362.1| Y40B1B.3 [Caenorhabditis elegans] 0.0
blast CAB07181 Hypothetical protein F09C3.3 [Caenorhabditis elegans] ref|NP_493495.1| F09C3.3 [Caenorhabditis elegans] 1.0E-28
blast CAB82208 Hypothetical protein F09C3.5 [Caenorhabditis elegans] ref|NP_493494.1| F09C3.5 [Caenorhabditis elegans] 9.0E-26
blast CAB82208 Hypothetical protein F09C3.5 [Caenorhabditis elegans] ref|NP_493494.1| F09C3.5 [Caenorhabditis elegans] 1.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.9E-7
Sequence
Target Sequence 
>C. ELEGANS:181916_AT
ggttggtgactcgtgtaattctttgtcggagcatacgcttcgtggattcttccgattggc
atcttccaaatgtattggcttcaaatggtacccaattcaagtgctccactcctgttccaa
ttaaatcaatcaatatgtttctgagacactggacgaatggctcaaatccgaggcttgagt
gtatacgtatatctattgaagcagaagctcctttttctgaagaatccacgtatatcgaag
aggttttgaaagggattcattatcaaacggaacccatcgatagtgtaaaaacatttgacc
ctatcaatttgtatacgcataataacttgtgttttaatgagcacatactgaaacaaacca
ctggaattgttataagatgtggctatgagaaaaaagcaatggtgaatgtgaaattattcg
agactcccacagagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGGTGACTCGTGTAATTCTTTG 503 507 575 Antisense
AATTCTTTGTCGGAGCATACGCTTC 91 177 591 Antisense
CATACGCTTCGTGGATTCTTCCGAT 93 215 606 Antisense
ATTCTTCCGATTGGCATCTTCCAAA 499 11 620 Antisense
TGGTACCCAATTCAAGTGCTCCACT 569 551 660 Antisense
CTCCACTCCTGTTCCAATTAAATCA 526 235 678 Antisense
GACGAATGGCTCAAATCCGAGGCTT 342 379 726 Antisense
AGAAGCTCCTTTTTCTGAAGAATCC 192 75 777 Antisense
TCAAACGGAACCCATCGATAGTGTA 152 627 837 Antisense
TTGACCCTATCAATTTGTATACGCA 104 705 869 Antisense
AAATTATTCGAGACTCCCACAGAGT 549 115 985 Antisense
Sequence Source Affymetrix Proprietary Database