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[181915_at]

Description H03A11.2 /REP_DB=WormBase Gene ID /WP=CE18800 /TR=Q9XTW1 /GB=CAB07529.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 54      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 61      6grp_total > 45      4grp_total > 47      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 596
1 2 3 4 range
A 727.6
(3)
P 		316.1
(-2.3)
P 		262
(-3)
P 		279.1
(-2.8)
P 		466
B 838.1
(3)
P 		287.6
(-3)
P 		301.4
(-2.8)
P 		296.7
(-2.9)
P 		551
C 735
(3)
P 		242.2
(-3)
P 		252.3
(-2.9)
P 		360.9
(-1.6)
P 		493
avr 766.9
(3) 		282
(-2.9) 		271.9
(-3) 		312.2
(-2.5) 		495

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 528
1 2 3 4 5 6 range
A 479
(-0.3)
P 		698
(3)
P 		454.3
(-0.6)
P 		393.5
(-1.5)
P 		294.1
(-3)
P 		488
(-0.1)
P 		404
B 470.3
(1.9)
P 		370.3
(0.3)
P 		536.8
(3)
P 		357.2
(0.1)
P 		170.1
(-3)
P 		362.7
(0.2)
P 		367
C 456.3
(-0.5)
P 		657.1
(2.6)
P 		681.7
(3)
P 		389.5
(-1.5)
P 		294.2
(-3)
P 		426.4
(-1)
P 		388
avr 468.5
(1) 		575.1
(3) 		557.6
(2.7) 		380.1
(-0.6) 		252.8
(-3) 		425.7
(0.2) 		322
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 264.9
(3)
P 		68.6
(-2.3)
P 		68.5
(-2.3)
P 		40.9
(-3)
P 		224
B 267.2
(3)
P 		71
(-2.8)
P 		69.8
(-2.8)
P 		63.2
(-3)
P 		204
C 243.3
(3)
P 		69.6
(-2.7)
P 		87.9
(-2.1)
P 		60.9
(-3)
P 		182
avr 258.5
(3) 		69.7
(-2.6) 		75.4
(-2.4) 		55
(-3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 88.3
(-3)
P 		248.3
(3)
P 		98.9
(-2.6)
P 		99.8
(-2.6)
P 		88.8
(-3)
P 		118.8
(-1.9)
P 		160
B 163.7
(3)
P 		123.2
(0.4)
P 		130.4
(0.9)
P 		94.6
(-1.4)
P 		69.1
(-3)
P 		135.3
(1.2)
P 		95
C 169.1
(1.5)
P 		200.5
(3)
P 		173.5
(1.7)
P 		78.3
(-3)
P 		95.2
(-2.2)
P 		142.7
(0.2)
P 		122
avr 140.4
(0.2) 		190.7
(3) 		134.3
(-0.2) 		90.9
(-2.6) 		84.4
(-3) 		132.3
(-0.3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181915_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17776
Sequence Type Exemplar sequence
Representative Public ID H03A11.2 NCBI
Target Description H03A11.2 /REP_DB=WormBase Gene ID /WP=CE18800 /TR=Q9XTW1 /GB=CAB07529.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078127(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078127 NCBI Caenorhabditis elegans H03A11.2 (H03A11.2) mRNA, complete cds. 10/11 None
H03A11.2 ENSEMBL cdna:known chromosome:CEL140:X:15225807:15230538:-1 gene:H03A11.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15226160-15226578(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H03A11.2
Entrez Gene 181617 Entrez gene
SwissProt Q9XTW1 EMBL-EBI
WormBase CE32684 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD57697 Hypothetical protein H03A11.2 [Caenorhabditis elegans] emb|CAB07529.2| Hypothetical protein H03A11.2 [Caenorhabditis elegans] ref|NP_510528.2| H03A11.2 [Caenorhabditis elegans] 0.0
blast CAE63289 Hypothetical protein CBG07669 [Caenorhabditis briggsae] 0.0
blast XP_392215 PREDICTED: similar to ENSANGP00000022213 [Apis mellifera] 9.0E-49
Sequence
Target Sequence 
>C. ELEGANS:181915_AT
ggcaatgtcgttttttttcagaatccgaatccggtttcgagggatacagcatttcttccg
gttcaagactgacaacatctcatcacgcagggtacctgactcaaaacgctggtagtagct
acgacattgattaccaataccgtccagttccatgtattgctggtgaactcctagaatctg
tcaagcgaaatcatgcaaataccgaacattacaattacaatgcttgtgacagtggtcacc
acttctacaaggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAATGTCGTTTTTTTTCAGAATC 167 535 68 Antisense
GAATCCGAATCCGGTTTCGAGGGAT 276 329 88 Antisense
AGGGATACAGCATTTCTTCCGGTTC 263 59 107 Antisense
CTTCCGGTTCAAGACTGACAACATC 358 217 122 Antisense
TGACAACATCTCATCACGCAGGGTA 639 571 137 Antisense
GCAGGGTACCTGACTCAAAACGCTG 203 311 154 Antisense
GTAGTAGCTACGACATTGATTACCA 351 455 179 Antisense
TTGATTACCAATACCGTCCAGTTCC 109 681 194 Antisense
TACCGTCCAGTTCCATGTATTGCTG 140 651 205 Antisense
TGCTGGTGAACTCCTAGAATCTGTC 637 581 225 Antisense
AGTGGTCACCACTTCTACAAGGAAA 212 59 298 Antisense
Sequence Source Affymetrix Proprietary Database