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[181914_s_at]

Description C17D12.3 /REP_DB=WormBase Gene ID /WP=CE17407 /TR=O62065 /GB=CAB03891.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 31      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 691
1 2 3 4 range
A 619.5
(3)
P 		98.1
(-2.6)
A 		64.1
(-3)
A 		299
(-0.5)
P 		555
B 742.3
(3)
P 		71.4
(-2.8)
A 		51.6
(-3)
A 		289.8
(-0.9)
P 		691
C 573.6
(3)
P 		127.2
(-2.4)
A 		79.7
(-3)
A 		372.2
(0.6)
P 		494
avr 645.1
(3) 		98.9
(-2.7) 		65.1
(-3) 		320.3
(-0.4) 		580

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 403.6
(3)
P 		326.3
(1.7)
P 		86.2
(-2.1)
A 		97.6
(-2)
P 		71.1
(-2.4)
A 		33.2
(-3)
A 		370
B 462.5
(3)
P 		310.2
(1)
P 		98.7
(-1.9)
A 		79.5
(-2.1)
A 		73.7
(-2.2)
A 		14.9
(-3)
A 		448
C 422.7
(3)
P 		294.3
(1)
P 		90.1
(-2.1)
A 		40
(-2.8)
A 		43.1
(-2.8)
A 		29.8
(-3)
A 		393
avr 429.6
(3) 		310.3
(1.2) 		91.7
(-2) 		72.4
(-2.3) 		62.6
(-2.5) 		26
(-3) 		404
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 225.5
(3)
P 		21.3
(-2.9)
A 		16.7
(-3)
A 		43.8
(-2.2)
P 		209
B 236.7
(3)
P 		17.6
(-2.9)
A 		12
(-3)
A 		61.8
(-1.7)
P 		225
C 189.9
(3)
P 		36.6
(-2.7)
A 		27.8
(-3)
A 		62.8
(-1.7)
P 		162
avr 217.4
(3) 		25.2
(-2.8) 		18.8
(-3) 		56.1
(-1.9) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 74.4
(0.7)
P 		116
(3)
P 		18.8
(-2.4)
A 		24.8
(-2.1)
P 		21.5
(-2.3)
A 		8.1
(-3)
A 		108
B 160.9
(3)
P 		103.3
(0.8)
P 		24
(-2.3)
A 		21.1
(-2.4)
A 		29.9
(-2.1)
A 		5.5
(-3)
A 		155
C 156.7
(3)
P 		89.8
(0.3)
P 		22.9
(-2.4)
A 		8.1
(-3)
A 		13.9
(-2.8)
A 		10
(-2.9)
A 		149
avr 130.7
(3) 		103
(1.6) 		21.9
(-2.3) 		18
(-2.5) 		21.8
(-2.3) 		7.9
(-3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181914_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1956
Sequence Type Exemplar sequence
Representative Public ID C17D12.3 NCBI
Target Description C17D12.3 /REP_DB=WormBase Gene ID /WP=CE17407 /TR=O62065 /GB=CAB03891.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060561(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060561 NCBI Caenorhabditis elegans C17D12.3 (C17D12.3) mRNA, complete cds. 11/11 None
GENEFINDER00000011118 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11624847:11630021:-1 11/11 None
GENEFINDER00000012844 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11632505:11635206:1 11/11 None
C17D12.3 ENSEMBL cdna:known chromosome:CEL140:I:11624895:11628385:-1 gene:C17D12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060562 8/11 Cross Hyb Matching Probes None
SNAP00000011115 5/11 Cross Hyb Matching Probes None
SNAP00000012843 5/11 Cross Hyb Matching Probes None
Y47H9A.1 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11631167-11634658(+) 92.89 100.0
chrI:11624825-11628316(-) 92.89 100.0
Public Domain and Genome References
Gene Title
Ensembl C17D12.3
Entrez Gene 173046 Entrez gene
SwissProt O62065 EMBL-EBI
WormBase CE17407 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03891 Hypothetical protein C17D12.3 [Caenorhabditis elegans] ref|NP_492962.1| C17D12.3 [Caenorhabditis elegans] 0.0
blast CAA21046 Hypothetical protein Y47H9A.1 [Caenorhabditis elegans] emb|CAB03899.2| Hypothetical protein Y47H9A.1 [Caenorhabditis elegans] ref|NP_492963.1| Y47H9A.1 [Caenorhabditis elegans] 0.0
blast AAK84612 Hypothetical protein Y50D4B.4 [Caenorhabditis elegans] ref|NP_503377.2| Y50D4B.4 [Caenorhabditis elegans] 1.0E-151
blast CAB03891 Hypothetical protein C17D12.3 [Caenorhabditis elegans] ref|NP_492962.1| C17D12.3 [Caenorhabditis elegans] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 7.9E-39
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.5E-37
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 7.9E-39
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.5E-37
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 7.9E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492962.1 2 31-53,440-462
C17D12.3 2 31-53,440-462
GENEFINDER00000011118 2 128-150,537-559
GENEFINDER00000012844 1 238-260
Sequence
Target Sequence 
>C. ELEGANS:181914_S_AT
gcactgacccctaagactggagaaaattcagcaaaatttaaatacaatttcatcaataat
tcgtattcacacacccagccagacggatcaccaatcagattattcaattttaatggaatg
gaacgagtggaggattatacggagagtgatgtatttctacgcagagaaattccagagaaa
aagggaaacattggatgggcgctggatttaaaaatcgatggaaaatcagtggaaaaagtg
gtgatccgaatgattggaattgaggaaattgccaatggtggaggaacggccagagcttgt
ggacattatcctacgatctacccgaaatgcgccgatattccgattaacggaactttcact
tttactaattaccctctcgatcgtttgtttttggatatagagctggacgaggatatacaa
atttttaagaccaaactcgacgatgagagcagtgtggagaatgtttctgttgaagtctac
tggagtgagtgtattgggtactgtagggttactgtaggggtactgtcagcactaagcttt
aggattactgcggggctactgttgggtactgtagaaagcccagctaggattatcctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTGACCCCTAAGACTGGAGAAA 333 315 775 Antisense
CAGCCAGACGGATCACCAATCAGAT 365 203 850 Antisense
AACATTGGATGGGCGCTGGATTTAA 285 137 961 Antisense
GGAACGGCCAGAGCTTGTGGACATT 380 529 1057 Antisense
GTGGACATTATCCTACGATCTACCC 378 489 1073 Antisense
ATCCTACGATCTACCCGAAATGCGC 477 37 1082 Antisense
GAAATGCGCCGATATTCCGATTAAC 641 361 1098 Antisense
CTAATTACCCTCTCGATCGTTTGTT 228 225 1139 Antisense
GGGGTACTGTCAGCACTAAGCTTTA 200 497 1291 Antisense
TTACTGCGGGGCTACTGTTGGGTAC 707 679 1319 Antisense
GAAAGCCCAGCTAGGATTATCCTGC 490 359 1348 Antisense
Sequence Source Affymetrix Proprietary Database