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[181913_at]

Description Y43F4B.3 /REP_DB=WormBase Gene ID /WP=CE16628 /TR=O45932 /GB=CAA16332.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 76.3
(1.1)
P 		23.5
(-3)
A 		90.9
(2.3)
P 		100
(3)
M 		77
B 73.2
(3)
P 		44.8
(-1)
A 		30.6
(-3)
A 		61.6
(1.4)
P 		43
C 28.7
(-2.9)
A 		55.4
(-1.1)
A 		26.6
(-3)
A 		118.2
(3)
P 		92
avr 59.4
(-0.9) 		41.2
(-3) 		49.4
(-2.1) 		93.3
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 81.8
(1.7)
A 		49.4
(-1.1)
P 		27
(-3)
A 		39.7
(-1.9)
A 		96.5
(3)
P 		61.6
(-0)
P 		70
B 63.7
(0.1)
A 		39.3
(-3)
M 		87.1
(3)
A 		53.3
(-1.2)
A 		74.8
(1.5)
P 		51
(-1.5)
P 		48
C 70.9
(0.6)
P 		65.3
(0.2)
P 		19.7
(-3)
A 		104.2
(3)
P 		66.2
(0.3)
P 		60.8
(-0.1)
P 		85
avr 72.1
(1.8) 		51.3
(-1.8) 		44.6
(-3) 		65.7
(0.7) 		79.2
(3) 		57.8
(-0.7) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 27.8
(3)
P 		5.1
(-3)
A 		23.8
(1.9)
P 		14.6
(-0.5)
M 		23
B 23.4
(3)
P 		11.1
(-1.5)
A 		7.1
(-3)
A 		13.1
(-0.8)
P 		16
C 9.5
(-2.9)
A 		15.9
(0.7)
A 		9.3
(-3)
A 		19.9
(3)
P 		11
avr 20.2
(3) 		10.7
(-3) 		13.4
(-1.3) 		15.9
(0.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 15.1
(-0.6)
A 		17.6
(0)
P 		5.9
(-3)
A 		10.1
(-1.9)
A 		29.1
(3)
P 		15
(-0.6)
P 		23
B 22.2
(0.2)
A 		13.1
(-3)
M 		21.1
(-0.2)
A 		14.1
(-2.7)
A 		30.4
(3)
P 		19
(-1)
P 		17
C 26.3
(3)
P 		19.9
(1.2)
P 		5
(-3)
A 		20.9
(1.5)
P 		21.4
(1.6)
P 		20.4
(1.3)
P 		21
avr 21.2
(0.9) 		16.9
(-0.7) 		10.7
(-3) 		15
(-1.4) 		27
(3) 		18.1
(-0.3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181913_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7302
Sequence Type Exemplar sequence
Representative Public ID Y43F4B.3 NCBI
Target Description Y43F4B.3 /REP_DB=WormBase Gene ID /WP=CE16628 /TR=O45932 /GB=CAA16332.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067337(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067337 NCBI Caenorhabditis elegans Y43F4B.3 (Y43F4B.3) mRNA, complete cds. 11/11 None
SNAP00000007797 ENSEMBL cdna:SNAP chromosome:CEL140:III:13286508:13292593:-1 11/11 None
GENEFINDER00000007806 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13287594:13292593:-1 11/11 None
Y43F4B.3 ENSEMBL cdna:known chromosome:CEL140:III:13291890:13292593:-1 gene:Y43F4B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13291885-13292589(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F4B.3
Entrez Gene 3565129 Entrez gene
SwissProt O45932 EMBL-EBI
WormBase CE16628 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16330 Hypothetical protein Y43F4B.1 [Caenorhabditis elegans] ref|NP_499737.1| Y43F4B.1 [Caenorhabditis elegans] 1.0E-161
blast CAA16332 Hypothetical protein Y43F4B.3 [Caenorhabditis elegans] ref|NP_499738.1| Y43F4B.3 [Caenorhabditis elegans] 1.0E-119
blast CAA16332 Hypothetical protein Y43F4B.3 [Caenorhabditis elegans] ref|NP_499738.1| Y43F4B.3 [Caenorhabditis elegans] 1.0E-118
blast CAE65308 Hypothetical protein CBG10227 [Caenorhabditis briggsae] 8.0E-65
blast CAE65308 Hypothetical protein CBG10227 [Caenorhabditis briggsae] 4.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 3.2E-26
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.3E-10
Sequence
Target Sequence 
>C. ELEGANS:181913_AT
gcgacagcatctcacgctggatgggatggagatgatgagggcgacattcgtgccgcttat
acggaggatgagaagaaggagaacatcccacccatctcgctcacctctgtgagcacaaac
ggtgcatatcctgggcaaaaacgaaggagaagtgagtctgtccgcacactgaagcccgag
tgccctcccgaagagacgcagagattgagacagcgacgaagaatcagcgcgactgatgcg
acgcagagttcacgcacaatgaatgtcatcgaggatcgaaaaccccgtgtaaatagggcc
agaaagtcccaagatgctccgtccacttcgacttgcggttttgaaacccctgttggcacc
aaacgaaaatcgaaggctgccgattctcagaagccgccgaaacagtcgaaacttcggaaa
atcgatgaagcttcaacgtcaaaagctgtcgataattcgtcaaaagacgggaaaaagacc
acgaagccagctgtaactcaaagcaatcgcaggagatccgggttaagcttgagaccggtg
ccgattgagactattttctccgagtcttctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGACAGCATCTCACGCTGGATGGG 646 287 43 Antisense
TGATGAGGGCGACATTCGTGCCGCT 615 565 75 Antisense
GAAGAAGGAGAACATCCCACCCATC 119 341 114 Antisense
CATCTCGCTCACCTCTGTGAGCACA 99 213 135 Antisense
GCACAAACGGTGCATATCCTGGGCA 326 317 155 Antisense
AGGAGAAGTGAGTCTGTCCGCACAC 147 57 187 Antisense
TCAGCGCGACTGATGCGACGCAGAG 237 625 266 Antisense
TCCACTTCGACTTGCGGTTTTGAAA 284 587 364 Antisense
AAGGCTGCCGATTCTCAGAAGCCGC 524 161 415 Antisense
AGACCGGTGCCGATTGAGACTATTT 339 69 574 Antisense
GACTATTTTCTCCGAGTCTTCTGGA 84 373 591 Antisense
Sequence Source Affymetrix Proprietary Database