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[181912_at]

Description F58H10.1 /REP_DB=WormBase Gene ID /WP=CE11414 /TR=Q93827 /GB=CAB01975.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 89      4grp_high_8_8 > 06      6grp_total > 99      4grp_total > 02      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 555
1 2 3 4 range
A 187.3
(-2.6)
P 		223
(-2.2)
A 		154.9
(-3)
A 		661.1
(3)
P 		506
B 128.9
(-3)
M 		124.3
(-3)
P 		133.5
(-2.9)
P 		679.1
(3)
P 		555
C 194.7
(-2.4)
P 		143.8
(-3)
P 		183
(-2.5)
P 		658
(3)
P 		514
avr 170.3
(-2.8) 		163.7
(-2.9) 		157.1
(-3) 		666.1
(3) 		509

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 134.6
(2.7)
P 		102.1
(-0.8)
P 		137.5
(3)
M 		81.3
(-3)
A 		131
(2.3)
P 		109.7
(0)
A 		56
B 137.8
(-1)
A 		94
(-3)
A 		122.3
(-1.7)
P 		117.8
(-1.9)
A 		227.3
(3)
P 		199.7
(1.8)
P 		133
C 189.7
(3)
P 		114.6
(-1.5)
A 		90.4
(-3)
A 		170.3
(1.8)
P 		183
(2.6)
P 		183
(2.6)
P 		99
avr 154
(0.9) 		103.6
(-3) 		116.7
(-2) 		123.1
(-1.5) 		180.4
(3) 		164.1
(1.7) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 68.2
(-0)
P 		48.4
(-2.2)
A 		40.5
(-3)
A 		96.8
(3)
P 		56
B 41.1
(-2.5)
M 		30.7
(-3)
P 		30.9
(-3)
P 		144.7
(3)
P 		114
C 64.4
(-1)
P 		41.3
(-3)
P 		63.8
(-1.1)
P 		111
(3)
P 		70
avr 57.9
(-1.6) 		40.1
(-3) 		45.1
(-2.6) 		117.5
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 24.8
(-1.7)
P 		36.3
(2)
P 		29.9
(-0)
M 		20.6
(-3)
A 		39.5
(3)
P 		26.7
(-1.1)
A 		19
B 48
(-1.2)
A 		31.3
(-2.8)
A 		29.7
(-3)
P 		31.2
(-2.9)
A 		92.3
(3)
P 		74.5
(1.3)
P 		63
C 70.3
(3)
P 		35
(-1.5)
A 		23
(-3)
A 		34.2
(-1.6)
P 		59.2
(1.6)
P 		61.3
(1.9)
P 		47
avr 47.7
(0.3) 		34.2
(-1.9) 		27.5
(-3) 		28.7
(-2.8) 		63.7
(3) 		54.2
(1.4) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1945
Sequence Type Exemplar sequence
Representative Public ID F58H10.1 NCBI
Target Description F58H10.1 /REP_DB=WormBase Gene ID /WP=CE11414 /TR=Q93827 /GB=CAB01975.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059750(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059750 NCBI Caenorhabditis elegans F58H10.1 (F58H10.1) mRNA, complete cds. 10/11 None
F58H10.1 ENSEMBL cdna:known chromosome:CEL140:I:7763909:7764479:1 gene:F58H10.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019008 8/11 Cross Hyb Matching Probes None
SNAP00000019007 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7763839-7764410(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58H10.1
Entrez Gene 186556 Entrez gene
SwissProt Q93827 EMBL-EBI
WormBase CE36173 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01975 Hypothetical protein F58H10.1 [Caenorhabditis elegans] ref|NP_492151.2| F58H10.1 [Caenorhabditis elegans] 7.0E-37
Sequence
Target Sequence 
>C. ELEGANS:181912_AT
tgcagctcaaattccttgttttcattttattatcagtgctactgaccagtacaattgccc
gaccacaatataaaggtaacgatttttttaccaatcacatattcttattcaagtatattt
tttcagatattgattataaattatatggtgatggagacgatggagtagcagttgatgcag
tttatgaagttataagtgataagcctccagaaggaacacctaccaagcatcaccaccacc
atcatcacaagaaaatgtccaagtcaaaccgattggatcgactaaggagatatcttaatg
atcgacttcggtctttcgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAGCTCAAATTCCTTGTTTTCAT 658 577 14 Antisense
GTTTTCATTTTATTATCAGTGCTAC 191 449 31 Antisense
GCTACTGACCAGTACAATTGCCCGA 291 301 51 Antisense
GTACAATTGCCCGACCACAATATAA 376 461 62 Antisense
TTACCAATCACATATTCTTATTCAA 492 681 101 Antisense
GAGACGATGGAGTAGCAGTTGATGC 686 393 167 Antisense
GAAGTTATAAGTGATAAGCCTCCAG 486 335 199 Antisense
AAGCCTCCAGAAGGAACACCTACCA 274 149 214 Antisense
GAAAATGTCCAAGTCAAACCGATTG 398 353 264 Antisense
GGAGATATCTTAATGATCGACTTCG 216 519 299 Antisense
AATGATCGACTTCGGTCTTTCGTTT 544 161 310 Antisense
Sequence Source Affymetrix Proprietary Database