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[181910_at]

Description ZK1053.3 /REP_DB=WormBase Gene ID /WP=CE15519 /TR=O62505 /GB=CAB04977.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 169.4
(3)
A 		29.5
(-3)
A 		84.9
(-0.6)
A 		136.6
(1.6)
A 		140
B 118.7
(-0)
A 		95.4
(-3)
A 		99.1
(-2.5)
A 		142.1
(3)
A 		47
C 145.1
(3)
A 		32.5
(-2.3)
A 		18.2
(-3)
A 		88.1
(0.3)
A 		127
avr 144.4
(3) 		52.5
(-3) 		67.4
(-2) 		122.3
(1.6) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 127.7
(3)
A 		39.1
(-2.8)
A 		49.7
(-2.1)
A 		65.8
(-1.1)
A 		36.7
(-3)
A 		99.5
(1.1)
A 		91
B 81.6
(2.3)
A 		26.8
(-3)
A 		86.6
(2.7)
A 		51
(-0.7)
A 		89.3
(3)
A 		41.4
(-1.6)
A 		63
C 107.3
(3)
A 		81.1
(1.2)
A 		20.2
(-3)
A 		21.1
(-2.9)
A 		32.6
(-2.1)
A 		87.7
(1.6)
A 		87
avr 105.5
(3) 		49
(-2.7) 		52.2
(-2.4) 		46
(-3) 		52.9
(-2.3) 		76.2
(0) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 61.7
(3)
A 		6.4
(-3)
A 		22.2
(-1.3)
A 		20
(-1.5)
A 		55
B 37.8
(3)
A 		23.6
(-2.8)
A 		23
(-3)
A 		30.3
(-0)
A 		15
C 48
(3)
A 		9.4
(-2.6)
A 		6.3
(-3)
A 		14.9
(-1.8)
A 		42
avr 49.2
(3) 		13.1
(-3) 		17.2
(-2.3) 		21.7
(-1.6) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 23.5
(2.7)
A 		13.9
(-1.6)
A 		10.8
(-3)
A 		16.7
(-0.4)
A 		11.1
(-2.9)
A 		24.2
(3)
A 		13
B 28.4
(1.3)
A 		8.9
(-3)
A 		21
(-0.4)
A 		13.5
(-2)
A 		36.3
(3)
A 		15.4
(-1.6)
A 		27
C 39.8
(3)
A 		24.8
(0.5)
A 		5.1
(-2.8)
A 		4.2
(-3)
A 		10.5
(-1.9)
A 		29.4
(1.2)
A 		36
avr 30.6
(3) 		15.9
(-1.6) 		12.3
(-2.7) 		11.5
(-3) 		19.3
(-0.5) 		23
(0.6) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181910_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1916
Sequence Type Exemplar sequence
Representative Public ID ZK1053.3 NCBI
Target Description ZK1053.3 /REP_DB=WormBase Gene ID /WP=CE15519 /TR=O62505 /GB=CAB04977.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060923(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060923 NCBI Caenorhabditis elegans ZK1053.3 (ZK1053.3) mRNA, complete cds. 11/11 None
SNAP00000040803 ENSEMBL cdna:SNAP chromosome:CEL140:I:13254972:13257800:1 11/11 None
GENEFINDER00000040808 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13254972:13257800:1 11/11 None
ZK1053.3 ENSEMBL cdna:known chromosome:CEL140:I:13254972:13257800:1 gene:ZK1053.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13254902-13257731(+) 98.59 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1053.3
Entrez Gene 191508 Entrez gene
SwissProt O62505 EMBL-EBI
WormBase CE15519 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04977 Hypothetical protein ZK1053.3 [Caenorhabditis elegans] ref|NP_493324.1| ZK1053.3 [Caenorhabditis elegans] 0.0
blast CAB03285 Hypothetical protein T04D3.1 [Caenorhabditis elegans] ref|NP_493340.1| T04D3.1 [Caenorhabditis elegans] 1.0E-47
blast CAB04980 Hypothetical protein ZK1053.4 [Caenorhabditis elegans] ref|NP_493323.1| ZK1053.4 [Caenorhabditis elegans] 9.0E-47
blast CAB03285 Hypothetical protein T04D3.1 [Caenorhabditis elegans] ref|NP_493340.1| T04D3.1 [Caenorhabditis elegans] 6.0E-46
Sequence
Target Sequence 
>C. ELEGANS:181910_AT
ttcaaagtgcgacattgtcccctctcccgaaaagatgtgctctacgttcgttcaaacaat
cttggtcagtatgagaagtatgattatcatccaacataccaccggttcgagccatttaaa
tgctcaaaatgcaaagacgccacatcggaagatcacttggttccaaagtatgcagagcac
tgtccggaaaccaatgagtttgtgattcacacggagaacttgttcacagaacgaatggag
cagtatatttatgattcgatgacccaaggattccgccaagtttactatccacagttcctc
tatgatccttccaaggatcatacttcgaacgtttttgtaactgtgaactacttgtcaaca
gttatcacaagagacaaagatgggaggttcaagaaggaaaaattctgcgataatctgaag
aagtttgtggcgattcccgaagttgaagtgaatactttcactgtgcaagaattggagaag
aagaagaacaagcgtcgcgtggattcggattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAAAGTGCGACATTGTCCCCTCT 642 681 1792 Antisense
GATGTGCTCTACGTTCGTTCAAACA 392 409 1825 Antisense
ATGATTATCATCCAACATACCACCG 62 47 1871 Antisense
TACCACCGGTTCGAGCCATTTAAAT 629 649 1888 Antisense
AAGACGCCACATCGGAAGATCACTT 219 153 1925 Antisense
GTATGCAGAGCACTGTCCGGAAACC 376 455 1959 Antisense
TTCGATGACCCAAGGATTCCGCCAA 113 695 2046 Antisense
AAGTTTACTATCCACAGTTCCTCTA 692 155 2069 Antisense
AGTTCCTCTATGATCCTTCCAAGGA 645 61 2084 Antisense
GAAGTTTGTGGCGATTCCCGAAGTT 576 331 2211 Antisense
ACAAGCGTCGCGTGGATTCGGATTC 189 113 2279 Antisense
Sequence Source Affymetrix Proprietary Database