[Home] | [Total List]

[181909_s_at]

Description T10E9.2 /REP_DB=WormBase Gene ID /WP=CE13545 /TR=O01605 /GB=AAB52470.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_high_8_8 > 27      6grp_highest_nonorm > 91      6grp_total > 86      4grp_total > 37      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 110.1
(1.2)
P 		124.6
(3)
M 		75.9
(-3)
A 		103.6
(0.4)
A 		49
B 132.3
(2.6)
P 		135.5
(3)
P 		84.7
(-3)
A 		106.4
(-0.4)
P 		51
C 111.4
(3)
P 		78.6
(-2.7)
A 		76.9
(-3)
P 		80.1
(-2.4)
A 		35
avr 117.9
(3) 		112.9
(2.2) 		79.2
(-3) 		96.7
(-0.3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 67.2
(-3)
P 		88.2
(-2.3)
P 		151.2
(-0)
P 		147
(-0.2)
P 		166.5
(0.5)
P 		235.5
(3)
P 		168
B 56.7
(-3)
P 		83.1
(-2.3)
P 		140.1
(-0.8)
P 		120.6
(-1.3)
P 		172.7
(0.1)
P 		284.8
(3)
P 		228
C 66.2
(-3)
P 		93.5
(-2.3)
P 		107.6
(-1.9)
P 		174.2
(-0.1)
P 		196.8
(0.5)
P 		293
(3)
P 		227
avr 63.4
(-3) 		88.3
(-2.3) 		133
(-1) 		147.3
(-0.6) 		178.7
(0.3) 		271.1
(3) 		208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 40.1
(3)
P 		27
(-0.2)
M 		19.8
(-1.9)
A 		15.2
(-3)
A 		25
B 42.2
(3)
P 		33.5
(0.7)
P 		19.6
(-3)
A 		22.7
(-2.2)
P 		23
C 36.9
(3)
P 		22.6
(-0.7)
A 		26.8
(0.4)
P 		13.5
(-3)
A 		23
avr 39.7
(3) 		27.7
(-0.2) 		22.1
(-1.7) 		17.1
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 12.4
(-3)
P 		31.4
(-0.5)
P 		32.9
(-0.3)
P 		37.3
(0.3)
P 		50.2
(2.1)
P 		57.3
(3)
P 		45
B 19.7
(-3)
P 		27.6
(-2.5)
P 		34
(-2)
P 		31.9
(-2.2)
P 		70.2
(0.5)
P 		106.2
(3)
P 		87
C 24.5
(-3)
P 		28.5
(-2.7)
P 		27.4
(-2.8)
P 		35
(-2.1)
P 		63.7
(0.2)
P 		98.1
(3)
P 		74
avr 18.9
(-3) 		29.2
(-2.1) 		31.4
(-1.9) 		34.7
(-1.6) 		61.4
(0.7) 		87.2
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181909_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2261
Sequence Type Exemplar sequence
Representative Public ID T10E9.2 NCBI
Target Description T10E9.2 /REP_DB=WormBase Gene ID /WP=CE13545 /TR=O01605 /GB=AAB52470.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059483(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059483 NCBI Caenorhabditis elegans T10E9.2 (T10E9.2) mRNA, complete cds. 11/11 None
SNAP00000042994 ENSEMBL cdna:SNAP chromosome:CEL140:I:6550302:6553011:1 11/11 None
GENEFINDER00000043004 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6550302:6554629:1 11/11 None
T10E9.2 ENSEMBL cdna:known chromosome:CEL140:I:6550234:6553087:1 gene:T10E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6550230-6552940(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10E9.2
Entrez Gene 172365 Entrez gene
SwissProt O01605 EMBL-EBI
WormBase CE13545 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52470 Hypothetical protein T10E9.2 [Caenorhabditis elegans] ref|NP_491884.1| T10E9.2 [Caenorhabditis elegans] 0.0
blast CAE67228 Hypothetical protein CBG12667 [Caenorhabditis briggsae] 0.0
blast AAB52469 Hypothetical protein T10E9.1 [Caenorhabditis elegans] ref|NP_491885.1| T10E9.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181909_S_AT
ttgtctgtcgatgggaagcggctaaaatcaaaaatggatttattagctaaaagaagttac
ctgaatgttcctcgattctcagaagtaactacgcctggcaaaagtgaaagagacactgat
ggagaaatttatacgccaagtggtcgaagatctgctatgaatgctcgaaaacttctcact
gaaaccttcaaagttctccaagataactttcgaaataggaaagacacgtggaatgaatca
tcgtgctcttcttcgtcttcgtcggatgaatcaaactctgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTCTGTCGATGGGAAGCGGCTAA 305 707 1546 Antisense
GAAGTTACCTGAATGTTCCTCGATT 424 335 1598 Antisense
GAATGTTCCTCGATTCTCAGAAGTA 102 333 1608 Antisense
CTCAGAAGTAACTACGCCTGGCAAA 184 227 1623 Antisense
CAAGTGGTCGAAGATCTGCTATGAA 655 181 1682 Antisense
AGATCTGCTATGAATGCTCGAAAAC 301 65 1693 Antisense
GAAAACTTCTCACTGAAACCTTCAA 636 353 1712 Antisense
ACCTTCAAAGTTCTCCAAGATAACT 416 37 1729 Antisense
GAATGAATCATCGTGCTCTTCTTCG 508 331 1776 Antisense
CTTCTTCGTCTTCGTCGGATGAATC 484 221 1793 Antisense
TCGTCGGATGAATCAAACTCTGAAG 46 605 1804 Antisense
Sequence Source Affymetrix Proprietary Database