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[181908_s_at]

Description R09E10.1 /REP_DB=WormBase Gene ID /WP=CE23908 /TR=Q21876 /GB=CAA94302.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 47      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 67.5
(3)
A 		9.9
(-2.3)
A 		2.6
(-3)
A 		32.8
(-0.2)
A 		65
B 66.1
(3)
A 		10.3
(-2.2)
A 		19.6
(-1.3)
A 		1.9
(-3)
A 		64
C 74.5
(3)
A 		7.4
(-2.6)
A 		2.8
(-3)
A 		7.6
(-2.6)
A 		72
avr 69.4
(3) 		9.2
(-2.9) 		8.3
(-3) 		14.1
(-2.4) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 50.4
(-2.6)
A 		95.6
(3)
A 		47.1
(-3)
A 		86.9
(1.9)
A 		54
(-2.1)
A 		68.2
(-0.4)
A 		49
B 34.1
(-3)
A 		85.9
(3)
A 		60.5
(0.1)
A 		50.8
(-1.1)
A 		55.9
(-0.5)
M 		63.8
(0.4)
P 		52
C 48.9
(-2.9)
A 		67.7
(-0.1)
A 		75.4
(1.1)
A 		62.7
(-0.8)
A 		48.5
(-3)
A 		87.7
(3)
P 		39
avr 44.5
(-3) 		83.1
(3) 		61
(-0.4) 		66.8
(0.5) 		52.8
(-1.7) 		73.2
(1.5) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 24.6
(3)
A 		2.2
(-2.6)
A 		0.7
(-3)
A 		4.8
(-2)
A 		24
B 21.1
(3)
A 		2.5
(-2.4)
A 		4.5
(-1.8)
A 		0.4
(-3)
A 		21
C 24.7
(3)
A 		2.1
(-2.7)
A 		1
(-3)
A 		1.3
(-2.9)
A 		24
avr 23.5
(3) 		2.3
(-2.9) 		2.1
(-3) 		2.2
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 9.3
(-3)
A 		34
(3)
A 		10.3
(-2.8)
A 		22
(0.1)
A 		16.3
(-1.3)
A 		16.6
(-1.2)
A 		25
B 11.9
(-3)
A 		28.6
(3)
A 		14.7
(-2)
A 		13.4
(-2.5)
A 		22.7
(0.9)
M 		23.8
(1.3)
P 		17
C 18.1
(-1)
A 		20.7
(-0.1)
A 		19.2
(-0.6)
A 		12.6
(-3)
A 		15.7
(-1.9)
A 		29.3
(3)
P 		17
avr 13.1
(-3) 		27.8
(3) 		14.7
(-2.3) 		16
(-1.8) 		18.2
(-0.9) 		23.2
(1.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181908_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8595
Sequence Type Exemplar sequence
Representative Public ID R09E10.1 NCBI
Target Description R09E10.1 /REP_DB=WormBase Gene ID /WP=CE23908 /TR=Q21876 /GB=CAA94302.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069494(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069494 NCBI Caenorhabditis elegans R09E10.1 (R09E10.1) mRNA, complete cds. 11/11 None
SNAP00000005977 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10319375:10321048:-1 11/11 None
GENEFINDER00000005978 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10319545:10321031:-1 11/11 None
R09E10.1 ENSEMBL cdna:known chromosome:CEL140:IV:10319381:10321096:-1 gene:R09E10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5583084-5584582(+) 94.28 94.28
chrIV:10319459-10321054(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09E10.1
Entrez Gene 177920 Entrez gene
SwissProt Q21876 EMBL-EBI
WormBase CE35599 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94302 Hypothetical protein R09E10.1 [Caenorhabditis elegans] ref|NP_501895.2| R09E10.1 [Caenorhabditis elegans] 1.0E-152
blast AAK68186 Hypothetical protein C17G10.3 [Caenorhabditis elegans] ref|NP_495082.1| C17G10.3 [Caenorhabditis elegans] 1.0E-148
blast CAA94302 Hypothetical protein R09E10.1 [Caenorhabditis elegans] ref|NP_501895.2| R09E10.1 [Caenorhabditis elegans] 1.0E-143
blast CAA94302 Hypothetical protein R09E10.1 [Caenorhabditis elegans] ref|NP_501895.2| R09E10.1 [Caenorhabditis elegans] 1.0E-132
blast AAK68186 Hypothetical protein C17G10.3 [Caenorhabditis elegans] ref|NP_495082.1| C17G10.3 [Caenorhabditis elegans] 1.0E-126
blast AAK68186 Hypothetical protein C17G10.3 [Caenorhabditis elegans] ref|NP_495082.1| C17G10.3 [Caenorhabditis elegans] 1.0E-125
blast CAE59143 Hypothetical protein CBG02447 [Caenorhabditis briggsae] 5.0E-84
blast CAE59143 Hypothetical protein CBG02447 [Caenorhabditis briggsae] 1.0E-72
Sequence
Target Sequence 
>C. ELEGANS:181908_S_AT
tctgcaacttgacgccgaacttacaaagagtgctcgtttgatggaagaatacaagattgc
ccttgagcaaatcatcacaacactcgtaagtatgatgagacgtggaaacgggacggttga
catggaaaacattgtaagcgacaaaggacaaacggcagcggagaagctgaacaaggaagt
acagttgactcaaaactattggaaaacggacacaaagttgcaaccagcaatgaacgatgc
aattgcaaaaaatactgtcgttctggcagcagctgagagaaatttgcagactcaagggcc
ccaacatctcaaaagagtcaagaagtttctttacggtcaatatccgaagtatgtggatat
gaagagagacctgctgaaaattgtcaaacagcagaagcccgaagcccaaagtgttcgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCAACTTGACGCCGAACTTACA 194 599 357 Antisense
GCCGAACTTACAAAGAGTGCTCGTT 486 283 370 Antisense
AGATTGCCCTTGAGCAAATCATCAC 325 65 410 Antisense
GCAAATCATCACAACACTCGTAAGT 596 317 423 Antisense
AAATACTGTCGTTCTGGCAGCAGCT 52 115 606 Antisense
CTGTCGTTCTGGCAGCAGCTGAGAG 679 239 611 Antisense
GAAATTTGCAGACTCAAGGGCCCCA 699 361 635 Antisense
AGGGCCCCAACATCTCAAAAGAGTC 67 57 651 Antisense
GAGACCTGCTGAAAATTGTCAAACA 592 393 722 Antisense
GTCAAACAGCAGAAGCCCGAAGCCC 465 463 739 Antisense
AAGCCCGAAGCCCAAAGTGTTCGCG 96 149 751 Antisense
Sequence Source Affymetrix Proprietary Database