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[181907_at]

Description C50A2.2 /REP_DB=WormBase Gene ID /WP=CE17580 /TR=O44139 /GB=AAB88322.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 63      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 82.8
(3)
A 		24.9
(-3)
A 		43.7
(-1.1)
A 		83
(3)
A 		58
B 75.6
(2.7)
A 		59.5
(1.1)
A 		79
(3)
A 		16.2
(-3)
A 		63
C 66.2
(3)
A 		58.9
(1.9)
A 		51.5
(0.7)
A 		28.1
(-3)
A 		38
avr 74.9
(3) 		47.8
(-2) 		58.1
(-0.1) 		42.4
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 51.5
(-2.4)
A 		46.6
(-3)
A 		67.2
(-0.5)
A 		52
(-2.3)
A 		95.3
(3)
A 		81
(1.2)
A 		49
B 101.6
(3)
A 		45.6
(-3)
A 		65.9
(-0.8)
A 		64.7
(-1)
A 		75.4
(0.2)
A 		74.5
(0.1)
A 		56
C 69.6
(-0.7)
A 		72.1
(-0.5)
A 		47.6
(-3)
A 		100.7
(2.5)
A 		105.9
(3)
A 		74.1
(-0.3)
A 		58
avr 74.2
(0.1) 		54.8
(-3) 		60.2
(-2.1) 		72.5
(-0.2) 		92.2
(3) 		76.5
(0.5) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 30.1
(3)
A 		5.4
(-3)
A 		11.4
(-1.5)
A 		12.1
(-1.4)
A 		25
B 24.1
(3)
A 		14.7
(0.3)
A 		18.3
(1.3)
A 		3.4
(-3)
A 		21
C 21.9
(3)
A 		16.9
(1.3)
A 		18
(1.6)
A 		4.7
(-3)
A 		17
avr 25.4
(3) 		12.3
(-1.2) 		15.9
(-0) 		6.7
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 9.5
(-3)
A 		16.6
(-0.8)
A 		14.6
(-1.4)
A 		13.2
(-1.8)
A 		28.8
(3)
A 		19.7
(0.2)
A 		19
B 35.4
(3)
A 		15.2
(-3)
A 		16
(-2.8)
A 		17.1
(-2.4)
A 		30.6
(1.6)
A 		27.8
(0.7)
A 		20
C 25.8
(0.7)
A 		22
(-0.3)
A 		12.1
(-3)
A 		20.3
(-0.8)
A 		34.3
(3)
A 		24.8
(0.4)
A 		22
avr 23.6
(0.3) 		17.9
(-1.7) 		14.2
(-3) 		16.9
(-2) 		31.2
(3) 		24.1
(0.5) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181907_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10819
Sequence Type Exemplar sequence
Representative Public ID C50A2.2 NCBI
Target Description C50A2.2 /REP_DB=WormBase Gene ID /WP=CE17580 /TR=O44139 /GB=AAB88322.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067646(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067646 NCBI Caenorhabditis elegans C50A2.2 (C50A2.2) mRNA, complete cds. 11/11 None
GENEFINDER00000019678 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1163006:1176675:1 11/11 None
C50A2.2 ENSEMBL cdna:known chromosome:CEL140:IV:1170706:1176675:1 gene:C50A2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1170715-1176681(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50A2.2
Entrez Gene 176934 Entrez gene
SwissProt O44139 EMBL-EBI
WormBase CE34275 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6333 chromatin assembly or disassembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
785 chromatin inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3682 chromatin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB88322 Hypothetical protein C50A2.2 [Caenorhabditis elegans] ref|NP_500047.2| C50A2.2 [Caenorhabditis elegans] 0.0
blast CAE62119 Hypothetical protein CBG06159 [Caenorhabditis briggsae] 6.0E-10
Sequence
Target Sequence 
>C. ELEGANS:181907_AT
atctcgaatggtcgctgatttgtttgaattactcctcaaaaagggtgttgaatttgatga
aaagactttaccgccaacaatgtgtgccgccgtccgttccacccgttacgacattcgccg
tgatttccgttgcctccataatcaatatattgataaacgtccacgaatgtgtgaatggtt
cagtgccaccggcggcggcggctcctgcggcaccaccgaaatttgcacattttggaacaa
cgacgctggctaccttcccaatacgcaccaacgctcgaaattccacgtggatttgagtga
attcactgggaacaatttggggctcctcgcgttttcaatggcatggcacgaggatttcat
cgataataattctggggggccggaaatcaaccgcttcaacgcccacatcgatgtcccatg
cttcaccctttggatgaacggaaaaatgtgcgaaaaacttgaaaattcgcatggattatc
gatttttcggccgctcggcacagtgctcgacgtcaacgaactgaaaatcaagattactga
acattcgtcacgttttgtcgcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCGAATGGTCGCTGATTTGTTT 55 33 1050 Antisense
GACTTTACCGCCAACAATGTGTGCC 147 373 1113 Antisense
TACGACATTCGCCGTGATTTCCGTT 386 649 1156 Antisense
TTTCCGTTGCCTCCATAATCAATAT 446 669 1173 Antisense
TGTGTGAATGGTTCAGTGCCACCGG 585 555 1217 Antisense
TGCGGCACCACCGAAATTTGCACAT 564 583 1255 Antisense
TTTGGAACAACGACGCTGGCTACCT 297 665 1280 Antisense
CTGGGAACAATTTGGGGCTCCTCGC 80 241 1355 Antisense
CTCCTCGCGTTTTCAATGGCATGGC 350 235 1372 Antisense
CCATGCTTCACCCTTTGGATGAACG 383 271 1465 Antisense
ACATTCGTCACGTTTTGTCGCAATT 50 105 1590 Antisense
Sequence Source Affymetrix Proprietary Database