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[181906_at]

Description F42A6.9 /REP_DB=WormBase Gene ID /WP=CE28392 /TR=O44490 /GB=AAB92054.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 54      6grp_cgc > 22      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 176.2
(3)
P 		136.3
(-0.9)
A 		121.7
(-2.3)
A 		114.3
(-3)
A 		62
B 211.9
(3)
P 		124.3
(-1.5)
A 		162
(0.4)
P 		96
(-3)
A 		116
C 201.5
(3)
P 		123.7
(-1.1)
A 		138.8
(-0.3)
P 		87
(-3)
A 		115
avr 196.5
(3) 		128.1
(-1.2) 		140.8
(-0.4) 		99.1
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 151.5
(1.2)
P 		186.1
(3)
P 		67.5
(-3)
A 		101.9
(-1.3)
P 		112.5
(-0.7)
P 		80
(-2.4)
A 		119
B 215.8
(3)
P 		128.2
(-0.4)
A 		88.4
(-1.9)
P 		108.3
(-1.1)
P 		59
(-3)
A 		67
(-2.7)
A 		157
C 291.8
(3)
P 		154.6
(-0)
P 		185.5
(0.7)
A 		86.4
(-1.5)
P 		105.6
(-1.1)
P 		19.1
(-3)
A 		273
avr 219.7
(3) 		156.3
(0.7) 		113.8
(-0.9) 		98.9
(-1.4) 		92.4
(-1.6) 		55.4
(-3) 		164
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 64.1
(3)
P 		29.6
(-1.4)
A 		31.8
(-1.1)
A 		16.7
(-3)
A 		47
B 67.6
(3)
P 		30.7
(-1.7)
A 		37.5
(-0.8)
P 		20.5
(-3)
A 		47
C 66.7
(3)
P 		35.6
(-0.6)
A 		48.4
(0.9)
P 		14.7
(-3)
A 		52
avr 66.1
(3) 		32
(-1.2) 		39.2
(-0.3) 		17.3
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 27.9
(-1.5)
P 		66.2
(3)
P 		14.7
(-3)
A 		25.8
(-1.7)
P 		34
(-0.8)
P 		19.5
(-2.4)
A 		52
B 75.1
(3)
P 		42.7
(-0.6)
A 		21.5
(-3)
P 		28.7
(-2.2)
P 		24
(-2.7)
A 		25
(-2.6)
A 		54
C 108.2
(3)
P 		47.2
(-0.6)
P 		47.2
(-0.6)
A 		17.4
(-2.4)
P 		34.2
(-1.4)
P 		6.4
(-3)
A 		102
avr 70.4
(3) 		52
(0.9) 		27.8
(-1.8) 		24
(-2.2) 		30.7
(-1.5) 		17
(-3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181906_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10710
Sequence Type Exemplar sequence
Representative Public ID F42A6.9 NCBI
Target Description F42A6.9 /REP_DB=WormBase Gene ID /WP=CE28392 /TR=O44490 /GB=AAB92054.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067928 NCBI Caenorhabditis elegans mammalian ELKS/CAST/ERC/Rab6 interacting protein homolog family member (elks-1) (elks-1) mRNA, complete cds. 11/11 None
SNAP00000037848 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3342753:3347829:-1 11/11 None
GENEFINDER00000037855 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3342753:3347829:-1 11/11 None
F42A6.9 ENSEMBL cdna:known chromosome:CEL140:IV:3342522:3350014:-1 gene:F42A6.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3344329-3347835(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol elks-1
Ensembl F42A6.9
Entrez Gene 177102 Entrez gene
SwissProt O44490 EMBL-EBI
WormBase CE28392 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1596614_AT similar to cytomatrix protein p110 cfa
CANINE_2:CFAAFFX.12990.1.S1_S_AT similar to cytomatrix protein p110 cfa
HG-U95AV2:36842_AT CAZ-associated structural protein hs
HG-U133_PLUS_2:213938_AT CAZ-associated structural protein hs
HG-U133A_2:213938_AT CAZ-associated structural protein hs
HG-U133A:213938_AT CAZ-associated structural protein hs
HU35KSUBA:AB002376_AT CAZ-associated structural protein hs
U133_X3P:HS.7006.0.S1_3P_AT CAZ-associated structural protein hs
MG-U74BV2:116728_AT DNA segment, Chr 14, ERATO Doi 171, expressed mm
MOE430B:1434582_AT DNA segment, Chr 14, ERATO Doi 171, expressed mm
MOUSE430_2:1434582_AT DNA segment, Chr 14, ERATO Doi 171, expressed mm
MOE430B:1444681_AT DNA segment, Chr 14, ERATO Doi 171, expressed, mRNA (cDNA clone MGC:59433 IMAGE:6331997) mm
MOUSE430_2:1444681_AT DNA segment, Chr 14, ERATO Doi 171, expressed, mRNA (cDNA clone MGC:59433 IMAGE:6331997) mm
MG-U74BV2:104832_AT DNA segment, Chr 14, ERATO Doi 171, expressed, mRNA (cDNA clone MGC:59433 IMAGE:6331997) mm
MG-U74CV2:134829_AT DNA segment, Chr 14, ERATO Doi 171, expressed, mRNA (cDNA clone MGC:59433 IMAGE:6331997) mm
MG-U74CV2:136181_AT DNA segment, Chr 14, ERATO Doi 171, expressed, mRNA (cDNA clone MGC:59433 IMAGE:6331997) mm
MOE430B:1443705_AT DNA segment, Chr 14, ERATO Doi 171, expressed, mRNA (cDNA clone MGC:59433 IMAGE:6331997) mm
MOUSE430_2:1443705_AT DNA segment, Chr 14, ERATO Doi 171, expressed, mRNA (cDNA clone MGC:59433 IMAGE:6331997) mm
RAE230B:1392420_AT Cytomatrix protein p110 rn
RAT230_2:1392420_AT Cytomatrix protein p110 rn
RAE230B:1397158_AT Cytomatrix protein p110 rn
RAT230_2:1397158_AT Cytomatrix protein p110 rn
Protein Similarities
Method ID Description E-Value
blast AAB92054 Mammalian elks/cast/erc/rab6 interacting protein homolog protein 1 [Caenorhabditis elegans] ref|NP_500329.1| mammalian ELKS/CAST/ERC/Rab6 interacting protein homolog family member (elks-1) [Caenorhabditis elegans] 0.0
blast CAE73588 Hypothetical protein CBG21069 [Caenorhabditis briggsae] 0.0
blast CAE73587 Hypothetical protein CBG21068 [Caenorhabditis briggsae] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:181906_AT
gctcaaaatggtgcactctctggaaaaggagaatctaaccttgacagcccaatgcaagca
gctcaaacgtgacgacacgccgagagccggcaccacctctgcgcctagtgcaccgggaac
tttgaccagaagcacgagtgctcagaataatatgcacaaaagaattgaggagctggaaga
ggctctcagggagtcggtatcgattacggctgaacgggaagttcatttgtcgcagcagaa
gcatcacttacagcaggtctcctctcagttgaatgaggctagaaaagagatcaccgaact
ccgtcgcaccaagcaaaacccgtctgaaactggcgatcgggatcaaataatcagagccat
cgaaactgagcgtcgccagcatttggagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAAAATGGTGCACTCTCTGGAA 708 301 1425 Antisense
AATCTAACCTTGACAGCCCAATGCA 516 167 1456 Antisense
CTAGTGCACCGGGAACTTTGACCAG 367 225 1529 Antisense
GAGGCTCTCAGGGAGTCGGTATCGA 501 405 1603 Antisense
ACGGGAAGTTCATTTGTCGCAGCAG 143 95 1638 Antisense
GAAGCATCACTTACAGCAGGTCTCC 315 341 1662 Antisense
GCAGGTCTCCTCTCAGTTGAATGAG 2 311 1677 Antisense
AAAAGAGATCACCGAACTCCGTCGC 5 131 1707 Antisense
GCAAAACCCGTCTGAAACTGGCGAT 197 315 1737 Antisense
AGAGCCATCGAAACTGAGCGTCGCC 158 71 1777 Antisense
TGAGCGTCGCCAGCATTTGGAGCAA 376 569 1791 Antisense
Sequence Source Affymetrix Proprietary Database