[Home] | [Total List]

[181904_at]

Description C41H7.1 /REP_DB=WormBase Gene ID /WP=CE08672 /TR=O17154 /GB=AAB70934.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 08      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 20.9
(-2.9)
A 		20.1
(-3)
A 		62.9
(0.6)
A 		91.9
(3)
A 		72
B 25.5
(-3)
A 		43.5
(-2)
A 		56.5
(-1.4)
A 		138.9
(3)
A 		113
C 21.8
(-1.6)
A 		5.1
(-3)
A 		55.6
(1.1)
A 		79.2
(3)
A 		74
avr 22.7
(-3) 		22.9
(-3) 		58.3
(-0.3) 		103.3
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 13.1
(-3)
A 		62.3
(3)
A 		38.3
(0.1)
A 		42.3
(0.6)
A 		57.9
(2.5)
A 		15.7
(-2.7)
A 		49
B 22.6
(-0.1)
A 		34.6
(2.4)
A 		20
(-0.6)
A 		34.4
(2.4)
A 		37.4
(3)
A 		8.4
(-3)
A 		29
C 18.2
(-1.4)
A 		20.7
(-1)
A 		45.1
(3)
A 		8.3
(-3)
A 		42.3
(2.5)
A 		33.4
(1.1)
A 		37
avr 18
(-3) 		39.2
(1.6) 		34.5
(0.5) 		28.3
(-0.8) 		45.9
(3) 		19.2
(-2.7) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 7.6
(-1.4)
A 		4.4
(-3)
A 		16.4
(3)
A 		13.4
(1.5)
A 		12
B 8.1
(-3)
A 		10.7
(-2.3)
A 		13.1
(-1.6)
A 		29.6
(3)
A 		22
C 7.2
(-1.1)
A 		1.5
(-3)
A 		19.4
(3)
A 		13.4
(1)
A 		18
avr 7.6
(-2.1) 		5.5
(-3) 		16.3
(1.9) 		18.8
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.4
(-3)
A 		22.2
(3)
A 		8.3
(-1.2)
A 		10.7
(-0.5)
A 		17.5
(1.6)
A 		3.8
(-2.6)
A 		20
B 7.9
(-0.6)
A 		11.5
(1.2)
A 		4.8
(-2.2)
A 		9.1
(-0)
A 		15.2
(3)
A 		3.1
(-3)
A 		12
C 6.8
(-0.5)
A 		6.3
(-0.7)
A 		11.5
(1.9)
A 		1.7
(-3)
A 		13.7
(3)
A 		11.2
(1.8)
A 		12
avr 5.7
(-3) 		13.3
(1.7) 		8.2
(-1.5) 		7.2
(-2.1) 		15.5
(3) 		6
(-2.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181904_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4142
Sequence Type Exemplar sequence
Representative Public ID C41H7.1 NCBI
Target Description C41H7.1 /REP_DB=WormBase Gene ID /WP=CE08672 /TR=O17154 /GB=AAB70934.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062024 NCBI Caenorhabditis elegans C41H7.1 (C41H7.1) mRNA, complete cds. 11/11 None
SNAP00000027512 ENSEMBL cdna:SNAP chromosome:CEL140:II:3011277:3017460:1 11/11 None
GENEFINDER00000027513 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3014830:3017466:1 11/11 None
C41H7.1 ENSEMBL cdna:known chromosome:CEL140:II:3016063:3017466:1 gene:C41H7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3016061-3017465(+) 91.93 100.0
Public Domain and Genome References
Gene Title
Ensembl C41H7.1
Entrez Gene 183394 Entrez gene
SwissProt O17154 EMBL-EBI
WormBase CE32605 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70934 Hypothetical protein C41H7.1 [Caenorhabditis elegans] ref|NP_494425.2| C41H7.1 [Caenorhabditis elegans] 1.0E-117
blast AAO38669 Hypothetical protein C41H7.8 [Caenorhabditis elegans] ref|NP_872062.1| C41H7.8 [Caenorhabditis elegans] 4.0E-23
blast T32324 hypothetical protein C41H7.2 - Caenorhabditis elegans 4.0E-23
Sequence
Target Sequence 
>C. ELEGANS:181904_AT
gacctccgttgacttgtgcaggatctcagattcagtgatggcggcgttgaagctggagcc
aacggttgcggagcccgaggctcctagagcttcgatggggagtcggaagagaaaaagtac
cccgacgagaaagttatccggacaatttgaggatgctttgatggaaattgtggacgcacc
tccagtcaaatgctcgaagagccaagccaaaagttctcaaaagctcaaccaacttctaga
ttctctaatggaaagagctagctcatttcaagctgctgagccccaagctgccgagcccca
agctgctgtgcccatagctactgagccccaggaaaactcagagttcgagcagtttttgaa
gtccgccatggagattgcccgttcttctgagagttccgtctcaccagaaaatggagacga
gaggcatcttgcaaatgttcgggaagaaatcggcgggctcccggtggaaaatcaagagca
ggaatctaaaaaacagccggatgagcactttgatggagccctaatggaggcgaaaatcct
gcgggttctgaatcgcatgactccggagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCTCCGTTGACTTGTGCAGGATC 1 383 237 Antisense
GTGATGGCGGCGTTGAAGCTGGAGC 36 483 271 Antisense
CCCGAGGCTCCTAGAGCTTCGATGG 303 261 310 Antisense
GCACCTCCAGTCAAATGCTCGAAGA 85 315 412 Antisense
AGCTCAACCAACTTCTAGATTCTCT 373 79 458 Antisense
TCATTTCAAGCTGCTGAGCCCCAAG 454 619 499 Antisense
CGAGCAGTTTTTGAAGTCCGCCATG 386 249 582 Antisense
TCTTCTGAGAGTTCCGTCTCACCAG 600 617 619 Antisense
GGATGAGCACTTTGATGGAGCCCTA 67 515 735 Antisense
GCGAAAATCCTGCGGGTTCTGAATC 232 287 766 Antisense
TTCTGAATCGCATGACTCCGGAGCA 347 693 782 Antisense
Sequence Source Affymetrix Proprietary Database