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[181903_at]

Description C29F5.4 /REP_DB=WormBase Gene ID /WP=CE02511 /TR=Q18306 /GB=AAC46823.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 22      6grp_cgc > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 247.1
(1.3)
P 		104.6
(-2.5)
A 		84.3
(-3)
A 		313.4
(3)
M 		229
B 288.5
(3)
P 		103.1
(-2.9)
A 		100.8
(-3)
A 		168.5
(-0.8)
A 		188
C 252.1
(2.3)
P 		127.4
(-0.9)
A 		48.7
(-3)
A 		276.9
(3)
P 		228
avr 262.6
(3) 		111.7
(-1.9) 		77.9
(-3) 		252.9
(2.7) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 199.7
(3)
A 		112.3
(-1.6)
A 		85.4
(-3)
A 		109.6
(-1.7)
A 		140.3
(-0.1)
A 		104
(-2)
A 		114
B 186.8
(3)
P 		112.9
(-1.6)
A 		148.3
(0.6)
A 		90.4
(-3)
A 		113.6
(-1.6)
A 		102.1
(-2.3)
A 		96
C 149.4
(0.9)
P 		121.9
(-0.8)
M 		182.2
(3)
P 		149.3
(0.9)
A 		87.1
(-3)
A 		106.3
(-1.8)
A 		95
avr 178.6
(3) 		115.7
(-2.1) 		138.6
(-0.2) 		116.4
(-2) 		113.7
(-2.2) 		104.1
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 90
(3)
P 		22.7
(-2.9)
A 		22
(-3)
A 		45.9
(-0.9)
M 		68
B 92
(3)
P 		25.5
(-2.8)
A 		23.4
(-3)
A 		35.9
(-1.9)
A 		69
C 83.5
(3)
P 		36.6
(-1.2)
A 		17
(-3)
A 		46.7
(-0.3)
P 		67
avr 88.5
(3) 		28.3
(-2.3) 		20.8
(-3) 		42.8
(-1.1) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 36.8
(1.6)
A 		39.9
(2.4)
A 		18.6
(-3)
A 		27.8
(-0.7)
A 		42.3
(3)
A 		25.3
(-1.3)
A 		24
B 65
(3)
P 		37.6
(-1)
A 		36
(-1.2)
A 		24
(-3)
A 		46.2
(0.2)
A 		38.1
(-0.9)
A 		41
C 55.4
(3)
P 		37.2
(-1)
M 		46.4
(1)
P 		30
(-2.6)
A 		28.2
(-3)
A 		35.6
(-1.4)
A 		27
avr 52.4
(3) 		38.2
(-0.4) 		33.7
(-1.5) 		27.3
(-3) 		38.9
(-0.2) 		33
(-1.6) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181903_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5960
Sequence Type Exemplar sequence
Representative Public ID C29F5.4 NCBI
Target Description C29F5.4 /REP_DB=WormBase Gene ID /WP=CE02511 /TR=Q18306 /GB=AAC46823.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062862
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000032530 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6290600:6294099:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062862 7/11 Cross Hyb Matching Probes None
SNAP00000032518 3/11 Cross Hyb Matching Probes None
SNAP00000032519 3/11 Cross Hyb Matching Probes None
C29F5.4 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6291725-6294096(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495262 C29F5.3 [Caenorhabditis elegans] gb|AAC46822.1| Hypothetical protein C29F5.3 [Caenorhabditis elegans] 1.0E-137
blast NP_495263 MiRP K channel accessory Subunit family member (mps-1) [Caenorhabditis elegans] gb|AAC46823.2| Mirp k channel accessory subunit protein 1 [Caenorhabditis elegans] 1.0E-131
blast AAO65851 MPS-1 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032530 1 43-65
Sequence
Target Sequence 
>C. ELEGANS:181903_AT
aaacccaggtgactgcatggctcgtgaacaaaaacaaagagaaaggaccagaaaagcgaa
aagatagcgaatggaagccacttccaaatggaacaagaccaagaggacattacagcatat
caacagtcacatcagacattccggagattgtagtaagtgctgacgactgcatacattctg
attttccaaatcgtccacatactcctgcaatctcaatgatttacgattttggaattgcgt
caccggatttaatagagcccgatagccgtaagccatcaatttcctcttcaacagcaattc
ccatgtcatcttcgtcatcttcatcaatgaattcattgattgaaccaaatatgaattcaa
taaaatcaaatcctcgaacatattcgcttgacacaaacgcctccacgtcatcgagaactc
ctcgtgttgattgtgacgataaatcatttagcttagacgttcacgtggattgtgctggcc
tcgtctccgttgtccgatggcttcttattcgtagatttgacgtgactgttttcctgcctg
ttgtttacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCCAGGTGACTGCATGGCTCGT 308 125 323 Antisense
GCTGACGACTGCATACATTCTGATT 205 297 481 Antisense
GATTTTCCAAATCGTCCACATACTC 97 429 502 Antisense
ATAGAGCCCGATAGCCGTAAGCCAT 32 21 574 Antisense
CAACAGCAATTCCCATGTCATCTTC 355 189 611 Antisense
CATATTCGCTTGACACAAACGCCTC 256 215 701 Antisense
GAGAACTCCTCGTGTTGATTGTGAC 365 391 735 Antisense
GACGTTCACGTGGATTGTGCTGGCC 447 377 778 Antisense
GTTGTCCGATGGCTTCTTATTCGTA 398 435 811 Antisense
AGATTTGACGTGACTGTTTTCCTGC 124 67 835 Antisense
TGTTTTCCTGCCTGTTGTTTACAAC 359 561 849 Antisense
Sequence Source Affymetrix Proprietary Database