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[181902_at]

Description Y43D4A.5 /REP_DB=WormBase Gene ID /WP=CE21878 /TR=Q9NF26 /GB=CAB60346.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 11.6
(-1.4)
A 		23.9
(3)
A 		7.3
(-3)
A 		11.2
(-1.6)
A 		17
B 13.7
(-2.9)
A 		80.8
(3)
A 		42.4
(-0.4)
A 		12.5
(-3)
A 		68
C 15
(-1.9)
A 		27.7
(3)
A 		12.1
(-3)
A 		15.7
(-1.6)
A 		16
avr 13.4
(-2.9) 		44.1
(3) 		20.6
(-1.5) 		13.1
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 20.7
(-2.3)
A 		14.4
(-2.6)
A 		6.6
(-3)
A 		80.3
(0.8)
A 		122.9
(3)
A 		20.3
(-2.3)
A 		116
B 51.2
(-0.4)
A 		17
(-2.5)
A 		7.9
(-3)
A 		109
(3)
A 		58.4
(-0)
A 		47.4
(-0.7)
A 		101
C 49.8
(-0.9)
A 		35
(-1.9)
A 		19.1
(-2.9)
A 		48.2
(-1)
A 		110.5
(3)
A 		17.2
(-3)
A 		93
avr 40.6
(-1) 		22.1
(-2.2) 		11.2
(-3) 		79.2
(1.7) 		97.3
(3) 		28.3
(-1.8) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 4.2
(1.3)
A 		5.2
(3)
A 		1.9
(-2.5)
A 		1.6
(-3)
A 		4
B 4.4
(-2.4)
A 		20
(3)
A 		9.8
(-0.5)
A 		2.7
(-3)
A 		17
C 5
(-0.3)
A 		8
(3)
A 		4.2
(-1.2)
A 		2.6
(-3)
A 		5
avr 4.5
(-1.5) 		11.1
(3) 		5.3
(-1) 		2.3
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 3.8
(-2.6)
A 		5.1
(-2.4)
A 		1.4
(-3)
A 		20.4
(0.2)
A 		37.1
(3)
A 		5
(-2.4)
A 		36
B 17.8
(0.5)
A 		5.6
(-2.2)
A 		1.9
(-3)
A 		28.9
(3)
A 		23.7
(1.8)
A 		17.7
(0.5)
A 		27
C 18.5
(-0.4)
A 		10.7
(-1.9)
A 		4.9
(-3)
A 		9.7
(-2.1)
A 		35.7
(3)
A 		5.8
(-2.8)
A 		31
avr 13.4
(-0.8) 		7.1
(-2.1) 		2.7
(-3) 		19.7
(0.5) 		32.2
(3) 		9.5
(-1.6) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181902_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9745
Sequence Type Exemplar sequence
Representative Public ID Y43D4A.5 NCBI
Target Description Y43D4A.5 /REP_DB=WormBase Gene ID /WP=CE21878 /TR=Q9NF26 /GB=CAB60346.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070587(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070587 NCBI Caenorhabditis elegans Y43D4A.5 (Y43D4A.5) mRNA, complete cds. 11/11 None
SNAP00000037220 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16776016:16785016:1 11/11 None
GENEFINDER00000037225 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16773789:16785016:1 11/11 None
Y43D4A.5 ENSEMBL cdna:known chromosome:CEL140:IV:16773789:16785016:1 gene:Y43D4A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16773794-16785022(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43D4A.5
Entrez Gene 189854 Entrez gene
SwissProt Q9NF26 EMBL-EBI
WormBase CE32528 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60346 Hypothetical protein Y43D4A.5 [Caenorhabditis elegans] ref|NP_502988.2| Y43D4A.5 [Caenorhabditis elegans] 0.0
blast CAE68057 Hypothetical protein CBG13677 [Caenorhabditis briggsae] 1.0E-113
blast CAE68057 Hypothetical protein CBG13677 [Caenorhabditis briggsae] 1.0E-110
blast AAZ14281 proteophosphoglycan 5 [Leishmania major strain Friedlin] ref|XP_843163.1| proteophosphoglycan 5 [Leishmania major] 3.0E-19
blast AAZ14281 proteophosphoglycan 5 [Leishmania major strain Friedlin] ref|XP_843163.1| proteophosphoglycan 5 [Leishmania major] 4.0E-19
Sequence
Target Sequence 
>C. ELEGANS:181902_AT
ttgaaaaggccgacctctgcaacttcgaatcatctcacgacgaaacgactcggttcaagt
tttcaaaatcccgccaaatcgctgcccgccagaaaagatcatcccaactgacagatgact
tgctcgcggagccatcgaatattgcagacgacctactaccgtataccttccgtgcgtgga
gcatttgggcggggcgtagagccacaagacagaagcagattgatattggacccgactttt
cctcccacaaccaacattttgcggcagtttttctggaacctcaacaagctggaattctct
caattcccctgattctctcacctgtttccactaaaatccgtctccgacttttcgaaggaa
cacgtggaattcgtctaagaatctgttgtgatcgatattgtccattggaaactgaaaaag
gattatacagaggacatagaagttggatgaaaaagactgttttatgtccaccgaatactc
aaatgctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAAAAGGCCGACCTCTGCAACTT 363 703 4451 Antisense
CCTCTGCAACTTCGAATCATCTCAC 454 267 4464 Antisense
TGCCCGCCAGAAAAGATCATCCCAA 190 585 4533 Antisense
AACTGACAGATGACTTGCTCGCGGA 646 141 4556 Antisense
TGCAGACGACCTACTACCGTATACC 186 579 4593 Antisense
TATACCTTCCGTGCGTGGAGCATTT 688 637 4612 Antisense
TGGGCGGGGCGTAGAGCCACAAGAC 615 553 4636 Antisense
TTGATATTGGACCCGACTTTTCCTC 357 677 4670 Antisense
CTCCCACAACCAACATTTTGCGGCA 532 233 4692 Antisense
TCACCTGTTTCCACTAAAATCCGTC 443 607 4768 Antisense
GTCCACCGAATACTCAAATGCTCTC 313 477 4916 Antisense
Sequence Source Affymetrix Proprietary Database