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[181901_at]

Description Y40B1A.1 /REP_DB=WormBase Gene ID /WP=CE21786 /TR=Q9XW29 /GB=CAA22304.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 62.8
(-3)
A 		105.2
(3)
A 		102
(2.5)
A 		97.5
(1.9)
A 		42
B 37.8
(0.2)
A 		63.9
(3)
P 		8.6
(-3)
A 		60.7
(2.7)
A 		55
C 45.9
(-1.3)
A 		84.1
(3)
A 		31.2
(-3)
A 		32.5
(-2.9)
A 		53
avr 48.8
(-2.8) 		84.4
(3) 		47.3
(-3) 		63.6
(-0.4) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 96.8
(2.4)
P 		82.4
(1.4)
A 		105.2
(3)
A 		18.8
(-3)
A 		88.4
(1.8)
A 		33.8
(-2)
A 		86
B 39.3
(-3)
A 		101.2
(3)
A 		68.2
(-0.2)
M 		51
(-1.9)
P 		50.2
(-1.9)
P 		40.2
(-2.9)
A 		62
C 39.4
(-3)
A 		76
(2.9)
A 		51.9
(-1)
A 		57.9
(-0)
A 		76.6
(3)
P 		44.1
(-2.2)
A 		37
avr 58.5
(-0.6) 		86.5
(3) 		75.1
(1.5) 		42.6
(-2.6) 		71.7
(1.1) 		39.4
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 22.9
(1.2)
A 		22.8
(1.1)
A 		26.7
(3)
A 		14.3
(-3)
A 		12
B 12.1
(1.4)
A 		15.8
(3)
P 		2
(-3)
A 		12.9
(1.7)
A 		14
C 15.2
(0.1)
A 		24.2
(3)
A 		10.9
(-1.3)
A 		5.5
(-3)
A 		19
avr 16.7
(0.5) 		20.9
(3) 		13.2
(-1.6) 		10.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 17.8
(0.2)
P 		29.3
(3)
A 		22.9
(1.4)
A 		4.8
(-3)
A 		26.7
(2.4)
A 		8.2
(-2.2)
A 		25
B 13.7
(-2.9)
A 		33.7
(3)
A 		16.6
(-2.1)
M 		13.5
(-3)
P 		20.4
(-1)
P 		15
(-2.6)
A 		20
C 14.6
(-1.6)
A 		23.2
(2.3)
A 		13.2
(-2.3)
A 		11.6
(-3)
A 		24.8
(3)
P 		14.8
(-1.5)
A 		13
avr 15.4
(-1.3) 		28.7
(3) 		17.6
(-0.6) 		10
(-3) 		24
(1.5) 		12.7
(-2.1) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181901_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.382
Sequence Type Exemplar sequence
Representative Public ID Y40B1A.1 NCBI
Target Description Y40B1A.1 /REP_DB=WormBase Gene ID /WP=CE21786 /TR=Q9XW29 /GB=CAA22304.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060949(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060949 NCBI Caenorhabditis elegans Y40B1A.1 (Y40B1A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000031122 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13353480:13354895:1 11/11 None
Y40B1A.1 ENSEMBL cdna:known chromosome:CEL140:I:13353480:13354895:1 gene:Y40B1A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13353410-13354826(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40B1A.1
Entrez Gene 189780 Entrez gene
SwissProt Q9XW29 EMBL-EBI
WormBase CE21786 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22304 Hypothetical protein Y40B1A.1 [Caenorhabditis elegans] ref|NP_493350.1| Y40B1A.1 [Caenorhabditis elegans] 9.0E-37
Sequence
Target Sequence 
>C. ELEGANS:181901_AT
atgctcccggagccacgaggagctccaatttctgtgcaaatgaacctcccccttctactg
ccgatgcaaagtcgctccaccgaacactctccgcttttaaaatactttcgtgccgttttc
ttactttttcactcgttttctcgagtttttgtagcgaaaacctggttttatagtcgaaaa
actactctactctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCCCGGAGCCACGAGGAGCTC 261 41 13 Antisense
GCCACGAGGAGCTCCAATTTCTGTG 576 277 24 Antisense
CGAGGAGCTCCAATTTCTGTGCAAA 13 251 28 Antisense
AATTTCTGTGCAAATGAACCTCCCC 45 175 39 Antisense
CCCTTCTACTGCCGATGCAAAGTCG 469 257 62 Antisense
CTACTGCCGATGCAAAGTCGCTCCA 110 225 67 Antisense
GAACACTCTCCGCTTTTAAAATACT 669 351 94 Antisense
TCTCCGCTTTTAAAATACTTTCGTG 376 611 100 Antisense
TTTCACTCGTTTTCTCGAGTTTTTG 15 673 139 Antisense
TCGTTTTCTCGAGTTTTTGTAGCGA 689 603 145 Antisense
ATAGTCGAAAAACTACTCTACTCTC 396 19 182 Antisense
Sequence Source Affymetrix Proprietary Database