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[181900_at]

Description T05A8.3 /REP_DB=WormBase Gene ID /WP=CE18199 /TR=O44858 /GB=AAB95020.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 21      6grp_total > 34      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1630
1 2 3 4 range
A 1812
(3)
P 		1011.9
(-0.7)
P 		506.5
(-3)
P 		1561.3
(1.8)
P 		1306
B 1978.3
(3)
P 		803.1
(-2.3)
P 		658.9
(-3)
P 		1566
(1.1)
P 		1319
C 2136.3
(3)
P 		856.4
(-2.3)
P 		686.6
(-3)
P 		1443.6
(0.1)
P 		1450
avr 1975.5
(3) 		890.5
(-1.8) 		617.3
(-3) 		1523.6
(1) 		1358

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1067
1 2 3 4 5 6 range
A 1611.4
(2.1)
P 		1305.5
(0.4)
P 		1765.2
(3)
P 		762.9
(-2.6)
P 		814.1
(-2.3)
P 		698
(-3)
P 		1067
B 1679.9
(3)
P 		1521.1
(1.9)
P 		1418.7
(1.3)
P 		1168.5
(-0.4)
P 		779.9
(-3)
P 		780.8
(-3)
P 		900
C 1552
(3)
P 		1400.3
(1.9)
P 		1181.9
(0.4)
P 		1028.6
(-0.7)
P 		709.1
(-3)
P 		902.3
(-1.6)
P 		843
avr 1614.4
(3) 		1409
(1.5) 		1455.3
(1.9) 		986.7
(-1.4) 		767.7
(-3) 		793.7
(-2.8) 		847
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 575
1 2 3 4 range
A 659.8
(3)
P 		219.7
(-2)
P 		132.4
(-3)
P 		228.5
(-1.9)
P 		527
B 630.9
(3)
P 		198.3
(-2.4)
P 		152.7
(-3)
P 		333.7
(-0.7)
P 		478
C 707.2
(3)
P 		246.2
(-2.9)
P 		239.3
(-3)
P 		243.4
(-2.9)
P 		468
avr 666
(3) 		221.4
(-2.4) 		174.8
(-3) 		268.5
(-1.9) 		491

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 415
1 2 3 4 5 6 range
A 297.1
(-0.4)
P 		464.3
(3)
P 		384.4
(1.4)
P 		193.5
(-2.5)
P 		245.7
(-1.5)
P 		169.9
(-3)
P 		294
B 584.5
(3)
P 		506.3
(1.4)
P 		344.5
(-1.9)
P 		309.5
(-2.6)
P 		316.9
(-2.5)
P 		291.2
(-3)
P 		293
C 575.3
(3)
P 		427.3
(0.6)
P 		300.8
(-1.5)
P 		206.8
(-3)
P 		229.5
(-2.6)
P 		302.1
(-1.4)
P 		369
avr 485.6
(3) 		466
(2.5) 		343.2
(-0.4) 		236.6
(-3) 		264
(-2.3) 		254.4
(-2.6) 		249
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181900_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5872
Sequence Type Exemplar sequence
Representative Public ID T05A8.3 NCBI
Target Description T05A8.3 /REP_DB=WormBase Gene ID /WP=CE18199 /TR=O44858 /GB=AAB95020.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061941(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061941 NCBI Caenorhabditis elegans T05A8.3 (T05A8.3) mRNA, complete cds. 11/11 None
T05A8.3 ENSEMBL cdna:known chromosome:CEL140:II:2714649:2717435:-1 gene:T05A8.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017322 7/11 Cross Hyb Matching Probes None
GENEFINDER00000017335 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2715011-2717432(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A8.3
Entrez Gene 173615 Entrez gene
SwissProt O44858 EMBL-EBI
WormBase CE18199 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494342 T05A8.3 [Caenorhabditis elegans] gb|AAB95020.1| Hypothetical protein T05A8.3 [Caenorhabditis elegans] 3.0E-44
blast CAE72405 Hypothetical protein CBG19564 [Caenorhabditis briggsae] 5.0E-22
Sequence
Target Sequence 
>C. ELEGANS:181900_AT
gcgtgcacaacttttcctgtgtgcctgtgtgctgctccactagaataatggcatcctcca
cctccacaacactattcttccttctgctcgttgccacgtcatcaatgatgatgggacacg
tctccgcgggccgaattataccacagtcctacaccggcgtcgaccccggaatccaattcg
agctgctcaccgcaaaacgtggcgacggatacggatggaacgactgcgagttctcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTGCACAACTTTTCCTGTGTGCC 79 293 47 Antisense
GCACAACTTTTCCTGTGTGCCTGTG 109 317 51 Antisense
CCTGTGTGCTGCTCCACTAGAATAA 73 267 70 Antisense
CTAGAATAATGGCATCCTCCACCTC 442 225 86 Antisense
AATGATGATGGGACACGTCTCCGCG 55 165 150 Antisense
TCTCCGCGGGCCGAATTATACCACA 497 609 167 Antisense
TCCAATTCGAGCTGCTCACCGCAAA 619 575 218 Antisense
GCTGCTCACCGCAAAACGTGGCGAC 218 297 228 Antisense
GCTCACCGCAAAACGTGGCGACGGA 287 297 231 Antisense
GTGGCGACGGATACGGATGGAACGA 588 491 245 Antisense
GATGGAACGACTGCGAGTTCTCACC 281 407 260 Antisense
Sequence Source Affymetrix Proprietary Database