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[181899_at]

Description F56B3.9 /REP_DB=WormBase Gene ID /WP=CE17890 /TR=O45111 /GB=AAK29826.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 37      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 4.4
(3)
A 		1.8
(-2.8)
A 		1.7
(-3)
A 		3.1
(0.1)
A 		3
B 1.5
(-3)
A 		3.8
(3)
A 		2.5
(-0.4)
A 		1.6
(-2.7)
A 		2
C 4.3
(3)
A 		3.6
(1.7)
A 		1
(-3)
A 		2
(-1.2)
A 		3
avr 3.4
(3) 		3.1
(1.9) 		1.7
(-3) 		2.2
(-1.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2
(-0.3)
A 		1.9
(-0.8)
A 		1.5
(-3)
A 		2.6
(3)
A 		1.9
(-0.8)
A 		1.5
(-3)
A 		1
B 2.4
(0)
A 		1.8
(-2)
A 		3.3
(3)
A 		1.5
(-3)
A 		1.7
(-2.3)
A 		1.5
(-3)
A 		2
C 1.7
(-2.7)
A 		0.7
(-3)
A 		19.3
(3)
A 		1.6
(-2.7)
A 		1.1
(-2.9)
A 		0.8
(-3)
A 		19
avr 2
(-2.4) 		1.5
(-2.8) 		8
(3) 		1.9
(-2.5) 		1.6
(-2.7) 		1.3
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.6
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1
B 0.5
(-1)
A 		0.9
(3)
A 		0.6
(-0)
A 		0.3
(-3)
A 		1
C 1.4
(3)
A 		1
(0.8)
A 		0.3
(-3)
A 		0.3
(-3)
A 		1
avr 1.2
(3) 		0.8
(0.3) 		0.4
(-2.3) 		0.3
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.4
(-1.5)
A 		0.7
(3)
A 		0.3
(-3)
A 		0.7
(3)
A 		0.6
(1.5)
A 		0.4
(-1.5)
A 		0
B 0.8
(3)
A 		0.6
(-0)
A 		0.8
(3)
A 		0.4
(-3)
A 		0.7
(1.5)
A 		0.6
(-0)
A 		0
C 0.6
(-2.5)
A 		0.2
(-3)
A 		4.9
(3)
A 		0.3
(-2.9)
A 		0.3
(-2.9)
A 		0.3
(-2.9)
A 		5
avr 0.6
(-2.3) 		0.5
(-2.6) 		2
(3) 		0.5
(-2.6) 		0.5
(-2.6) 		0.4
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181899_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11016
Sequence Type Exemplar sequence
Representative Public ID F56B3.9 NCBI
Target Description F56B3.9 /REP_DB=WormBase Gene ID /WP=CE17890 /TR=O45111 /GB=AAK29826.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074086, NM_067585
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000041564 ENSEMBL cdna:SNAP chromosome:CEL140:IV:771421:772889:1 10/11 None
GENEFINDER00000041578 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:771603:772889:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067585 4/11 Cross Hyb Matching Probes A 
F56B3.9 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:771366-772803(+) 100.0 100.0
chrV:14046901-14047736(+) 57.84 57.84
chrV:14051473-14052308(-) 57.84 57.84
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast B88633 protein F56B3.9 [imported] - Caenorhabditis elegans 0.0
blast B88633 protein F56B3.9 [imported] - Caenorhabditis elegans 1.0E-151
blast CAB04719 Hypothetical protein T08G5.7 [Caenorhabditis elegans] ref|NP_506487.1| T08G5.7 [Caenorhabditis elegans] 1.0E-124
blast CAB04719 Hypothetical protein T08G5.7 [Caenorhabditis elegans] ref|NP_506487.1| T08G5.7 [Caenorhabditis elegans] 6.0E-59
blast NP_505144 W02D7.6 [Caenorhabditis elegans] gb|AAB63936.2| Hypothetical protein W02D7.6 [Caenorhabditis elegans] 1.0E-52
blast AAB94979 Hypothetical protein F52C6.14 [Caenorhabditis elegans] ref|NP_494132.1| F52C6.14 [Caenorhabditis elegans] 2.0E-45
Sequence
Target Sequence 
>C. ELEGANS:181899_AT
ggatcttatcaatctcgagcaaaagtcaaaaatgttggcgaatcgaagaagaagacggga
gataatgtgtgcccagcattcattcgaactgaaaaacacgcgttaacaggagaaatcggt
gtcgttggttatttcagtcactatgggcattcacttgagcatgctcggagagctctaagt
gatactgagactgagtatctgattggactcatgaaagaaggtttcaataatagacagatc
atcagaaaactggatcagaaatatgatgagaatagcagacttggcttcgttctttcgaaa
gatcttagctatcttcgcaaaacttactgtttaaacgagggccaattagacgacgacgac
atgaaatcgatcagacgtagagtagagcgagatgatcctgaagatggaatttatcacttt
tcacagccagactccaatggagataactttattcttggtacagctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCTTATCAATCTCGAGCAAAAG 583 511 712 Antisense
TGTGTGCCCAGCATTCATTCGAACT 492 555 777 Antisense
ATCGGTGTCGTTGGTTATTTCAGTC 389 35 826 Antisense
ATTTCAGTCACTATGGGCATTCACT 524 15 842 Antisense
GGGCATTCACTTGAGCATGCTCGGA 198 493 856 Antisense
GCTCGGAGAGCTCTAAGTGATACTG 515 299 874 Antisense
AATAGCAGACTTGGCTTCGTTCTTT 77 173 982 Antisense
TCTTAGCTATCTTCGCAAAACTTAC 6 615 1014 Antisense
CGAGGGCCAATTAGACGACGACGAC 245 205 1047 Antisense
TTTATCACTTTTCACAGCCAGACTC 17 675 1121 Antisense
GATAACTTTATTCTTGGTACAGCTT 164 421 1153 Antisense
Sequence Source Affymetrix Proprietary Database