[Home] | [Total List]

[181898_at]

Description F40G9.9 /REP_DB=WormBase Gene ID /WP=CE19856 /TR=Q9TZ77 /GB=AAC68801.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 01      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 3.6
(-2.4)
A 		1.5
(-3)
A 		4.4
(-2.1)
A 		21.1
(3)
A 		20
B 14
(3)
A 		1.3
(-3)
A 		6.1
(-0.7)
A 		10.8
(1.5)
A 		13
C 1.3
(-3)
A 		3.1
(-2.8)
A 		15.8
(-1.8)
A 		73.2
(3)
A 		72
avr 6.3
(-2.2) 		2
(-3) 		8.8
(-1.8) 		35
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 6.7
(0.2)
A 		2.9
(-2.2)
A 		11
(3)
A 		1.7
(-3)
A 		2.5
(-2.5)
A 		5.1
(-0.8)
A 		9
B 1.1
(-2.9)
A 		10.2
(-1.2)
A 		1.8
(-2.8)
A 		0.7
(-3)
A 		3.2
(-2.5)
A 		33.1
(3)
A 		32
C 0.8
(-3)
A 		1.4
(-2.8)
A 		3.7
(-2.2)
A 		2
(-2.7)
A 		6.1
(-1.6)
A 		23.3
(3)
A 		23
avr 2.9
(-2.6) 		4.8
(-2) 		5.5
(-1.7) 		1.5
(-3) 		3.9
(-2.2) 		20.5
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.3
(-0.9)
A 		0.3
(-3)
A 		1.1
(-1.3)
A 		3.1
(3)
A 		3
B 4.5
(3)
A 		0.3
(-3)
A 		1.4
(-1.4)
A 		2.3
(-0.1)
A 		4
C 0.4
(-3)
A 		0.9
(-2.7)
A 		5.5
(-0.4)
A 		12.3
(3)
A 		12
avr 2.1
(-1.2) 		0.5
(-3) 		2.7
(-0.6) 		5.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.2
(-0.6)
A 		1
(-1.2)
A 		2.4
(3)
A 		0.4
(-3)
A 		0.8
(-1.8)
A 		1.2
(-0.6)
A 		2
B 0.4
(-2.9)
A 		3.4
(-1.4)
A 		0.4
(-2.9)
A 		0.2
(-3)
A 		1.3
(-2.5)
A 		12.3
(3)
A 		12
C 0.3
(-3)
A 		0.4
(-2.9)
A 		0.9
(-2.5)
A 		0.4
(-2.9)
A 		2
(-1.6)
A 		7.8
(3)
A 		8
avr 0.6
(-2.7) 		1.6
(-1.9) 		1.2
(-2.2) 		0.3
(-3) 		1.4
(-2) 		7.1
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181898_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8297
Sequence Type Exemplar sequence
Representative Public ID F40G9.9 NCBI
Target Description F40G9.9 /REP_DB=WormBase Gene ID /WP=CE19856 /TR=Q9TZ77 /GB=AAC68801.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064765(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064765 NCBI Caenorhabditis elegans F40G9.9 (F40G9.9) mRNA, complete cds. 11/11 None
SNAP00000021765 ENSEMBL cdna:SNAP chromosome:CEL140:III:167384:169212:-1 11/11 None
GENEFINDER00000021782 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:167384:169359:-1 11/11 None
F40G9.9 ENSEMBL cdna:known chromosome:CEL140:III:167384:171450:-1 gene:F40G9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:167383-171709(-) 74.09 93.65
Public Domain and Genome References
Gene Title
Ensembl F40G9.9
Entrez Gene 185557 Entrez gene
SwissProt Q9TZ77 EMBL-EBI
WormBase CE32413 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
1539 ciliary or flagellar motility inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
9288 flagellum (sensu Bacteria) inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68801 Hypothetical protein F40G9.9 [Caenorhabditis elegans] ref|NP_497166.2| F40G9.9 [Caenorhabditis elegans] 0.0
blast AAC68801 Hypothetical protein F40G9.9 [Caenorhabditis elegans] ref|NP_497166.2| F40G9.9 [Caenorhabditis elegans] 1.0E-141
blast CAE75076 Hypothetical protein CBG22994 [Caenorhabditis briggsae] 2.0E-63
blast CAE75076 Hypothetical protein CBG22994 [Caenorhabditis briggsae] 5.0E-63
blast CAE57090 Hypothetical protein CBG24990 [Caenorhabditis briggsae] 5.0E-60
blast CAE57090 Hypothetical protein CBG24990 [Caenorhabditis briggsae] 6.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.8E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.8E-5
Sequence
Target Sequence 
>C. ELEGANS:181898_AT
gtcccgcgagcgaaattcatttaaatattgattcaaaagattttacaacttgtttaccgc
atattgaaaacattaactatgctttcctgcacaataccagtggaattaatagaagattca
aagcagccgacattgaacagctaaatatgaagaatttggttattaaaaacccgattgatg
gaatcttcaagaataattcaaaaattctaaacttaaaccacttgctcatttcctacgttg
gttcattaattgatctacctacttggcatttcaccgggcgtcacatatggctatctgaag
tgaatatctcaaacgaagatgtgattcgttgtctgaaactttggaaatcaggtgcagcgt
ttcaaaatctagaatctctacttattcgtactgaaaaagaatatcccttagaagctgata
tgatctacaaccaacttgatgcaaacccatggaatccttttagacggccgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCCGCGAGCGAAATTCATTTAAA 69 475 2186 Antisense
ACTATGCTTTCCTGCACAATACCAG 697 99 2261 Antisense
TAAACTTAAACCACTTGCTCATTTC 248 639 2393 Antisense
TGCTCATTTCCTACGTTGGTTCATT 231 579 2408 Antisense
TGATCTACCTACTTGGCATTTCACC 606 563 2436 Antisense
CGGGCGTCACATATGGCTATCTGAA 371 245 2460 Antisense
GATGTGATTCGTTGTCTGAAACTTT 647 407 2503 Antisense
AAATCAGGTGCAGCGTTTCAAAATC 169 117 2530 Antisense
GCTGATATGATCTACAACCAACTTG 660 295 2599 Antisense
GATGCAAACCCATGGAATCCTTTTA 614 405 2623 Antisense
TGGAATCCTTTTAGACGGCCGAAAT 608 545 2635 Antisense
Sequence Source Affymetrix Proprietary Database