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[181896_at]

Description K09D9.3 /REP_DB=WormBase Gene ID /WP=CE21057 /TR=Q9N5I2 /GB=AAF39920.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 33      6grp_total > 02      4grp_total > 06      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 85.5
(-0.5)
P 		28.9
(-3)
A 		60.7
(-1.6)
P 		162.7
(3)
P 		134
B 89.3
(3)
P 		46.9
(-3)
A 		46.7
(-3)
A 		55.9
(-1.7)
P 		43
C 86.3
(-0.1)
P 		35.6
(-3)
A 		43.8
(-2.5)
A 		141.2
(3)
P 		106
avr 87
(0.6) 		37.1
(-3) 		50.4
(-2) 		119.9
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 74.1
(2.9)
A 		41
(-0.8)
A 		75.3
(3)
P 		21.7
(-3)
A 		57.4
(1)
A 		37.6
(-1.2)
A 		54
B 75.1
(3)
P 		56.3
(-0.7)
A 		56.1
(-0.8)
P 		47.1
(-2.5)
M 		71.1
(2.2)
P 		44.8
(-3)
A 		30
C 29.2
(-2.1)
A 		135.5
(3)
P 		10.8
(-3)
A 		77.4
(0.2)
P 		51.6
(-1)
A 		38.3
(-1.7)
P 		125
avr 59.5
(0.1) 		77.6
(3) 		47.4
(-1.8) 		48.7
(-1.6) 		60
(0.2) 		40.2
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 31.1
(3)
P 		6.3
(-3)
A 		15.9
(-0.7)
P 		23.8
(1.2)
P 		25
B 28.5
(3)
P 		11.6
(-2.7)
A 		10.8
(-3)
A 		11.9
(-2.6)
P 		18
C 28.6
(3)
P 		10.2
(-3)
A 		15.3
(-1.3)
A 		23.8
(1.4)
P 		18
avr 29.4
(3) 		9.4
(-3) 		14
(-1.6) 		19.8
(0.1) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 13.7
(1.2)
A 		14.6
(1.6)
A 		16.4
(2.5)
P 		5.5
(-3)
A 		17.3
(3)
A 		9.2
(-1.1)
A 		12
B 26.1
(2)
P 		18.7
(-0.7)
A 		13.6
(-2.6)
P 		12.5
(-3)
M 		28.9
(3)
P 		16.7
(-1.5)
A 		16
C 10.8
(-1.7)
A 		41.3
(3)
P 		2.7
(-3)
A 		15.6
(-1)
P 		16.7
(-0.8)
A 		12.8
(-1.4)
P 		39
avr 16.9
(-0.4) 		24.9
(3) 		10.9
(-3) 		11.2
(-2.9) 		21
(1.3) 		12.9
(-2.1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181896_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14849
Sequence Type Exemplar sequence
Representative Public ID K09D9.3 NCBI
Target Description K09D9.3 /REP_DB=WormBase Gene ID /WP=CE21057 /TR=Q9N5I2 /GB=AAF39920.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071719(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071719 NCBI Caenorhabditis elegans K09D9.3 (K09D9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000015719 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4016893:4020272:1 9/11 None
K09D9.3 ENSEMBL cdna:known chromosome:CEL140:V:4019301:4020414:1 gene:K09D9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4019300-4020414(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09D9.3
Entrez Gene 187210 Entrez gene
SwissProt Q9N5I2 EMBL-EBI
WormBase CE21057 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP31433 Serpentine receptor, class w protein 89 [Caenorhabditis elegans] ref|NP_001024046.1| Serpentine Receptor, class W family member (srw-89) [Caenorhabditis elegans] 1.0E-173
blast AAF39920 Hypothetical protein K09D9.3 [Caenorhabditis elegans] ref|NP_504120.1| K09D9.3 [Caenorhabditis elegans] 1.0E-171
blast AAF39920 Hypothetical protein K09D9.3 [Caenorhabditis elegans] ref|NP_504120.1| K09D9.3 [Caenorhabditis elegans] 1.0E-101
blast AAF60625 Serpentine receptor, class w protein 90 [Caenorhabditis elegans] ref|NP_503486.1| Serpentine Receptor, class W family member (srw-90) [Caenorhabditis elegans] 1.0E-74
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504120.1 7 31-53,60-82,97-116,154-176,202-221,241-263,273-295
K09D9.3 7 31-53,60-82,97-116,154-176,202-221,241-263,273-295
GENEFINDER00000015719 12 29-51,58-80,114-133,153-175,219-241,262-284,306-328,391-413,428-447,485-507,533-552,569-591
Sequence
Target Sequence 
>C. ELEGANS:181896_AT
ggtgcacacttcatatattcgtagcaaaacttgtgttttttcgaacaattcctcattcgc
taatgttatgttattctttatttttgaacaaaaaagatgaggaaaggaaatattatttat
gtggctgtagaattacaagaacaaaaattagcttttttatcatttttctgatattttttg
tcgattttttgagagtcctcgcactattttcggcaatcctaaaacagacgccgccttcaa
aaatcaattttcaagatgcatatctttctgcccatttgttgttaccagacgggcgtgtta
tacatttcgatcttctcagaatccttataatttctctagtgatgctaaatattcttaaga
aaatttgttcgcacccgacaggaaaattgttcgaaacttcggagtacctgtacattgttc
acatactcgtttacttgtggattgtctttatttgcacagtggcatacatgactttatttt
attttgaagttttagaagggcctgaaaacgtgattgcatttcaagattcaacaattttac
actactcttttgtctaccctatttatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCACACTTCATATATTCGTAGC 350 499 320 Antisense
GAACAATTCCTCATTCGCTAATGTT 224 353 362 Antisense
TTTTGAGAGTCCTCGCACTATTTTC 233 671 506 Antisense
AACAGACGCCGCCTTCAAAAATCAA 457 137 542 Antisense
AAGATGCATATCTTTCTGCCCATTT 400 155 572 Antisense
CTGCCCATTTGTTGTTACCAGACGG 640 233 587 Antisense
GCGTGTTATACATTTCGATCTTCTC 236 293 612 Antisense
AGAAAATTTGTTCGCACCCGACAGG 412 71 677 Antisense
ACATTGTTCACATACTCGTTTACTT 114 105 731 Antisense
GATTCAACAATTTTACACTACTCTT 520 429 844 Antisense
TACTCTTTTGTCTACCCTATTTATT 119 647 862 Antisense
Sequence Source Affymetrix Proprietary Database