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[181895_s_at]

Description T06D10.2 /REP_DB=WormBase Gene ID /WP=CE25102 /TR=Q9U380 /GB=CAB63306.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 91      6grp_total > 68      4grp_total > 07      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 234.7
(2.6)
P 		131.8
(-3)
P 		134.5
(-2.9)
P 		242.5
(3)
P 		111
B 227.7
(3)
P 		147.3
(-2.6)
P 		143.9
(-2.9)
P 		142.1
(-3)
P 		86
C 145.5
(-3)
P 		164.4
(-2)
P 		255.9
(3)
P 		157.3
(-2.4)
P 		110
avr 202.6
(3) 		147.8
(-3) 		178.1
(0.3) 		180.6
(0.6) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 399
1 2 3 4 5 6 range
A 229.4
(0.5)
P 		82.1
(-3)
P 		136.7
(-1.7)
P 		164.6
(-1)
P 		192.3
(-0.4)
P 		333.5
(3)
P 		251
B 200.7
(-1.3)
P 		118.1
(-3)
P 		137.8
(-2.6)
P 		154
(-2.3)
P 		192.1
(-1.5)
P 		409.6
(3)
P 		292
C 128.2
(-2.5)
P 		189.8
(-1.6)
P 		98.7
(-3)
P 		169.5
(-1.9)
P 		196.2
(-1.5)
P 		481
(3)
P 		382
avr 186.1
(-1.7) 		130
(-2.9) 		124.4
(-3) 		162.7
(-2.2) 		193.5
(-1.5) 		408
(3) 		284
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 85.5
(3)
P 		28.6
(-3)
P 		35.2
(-2.3)
P 		35.5
(-2.3)
P 		57
B 72.6
(3)
P 		36.4
(-2.1)
P 		33.3
(-2.6)
P 		30.3
(-3)
P 		42
C 48.2
(-0.9)
P 		47.3
(-1)
P 		89.2
(3)
P 		26.5
(-3)
P 		63
avr 68.8
(3) 		37.4
(-2) 		52.6
(0.4) 		30.8
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 42.3
(-1.5)
P 		29.2
(-3)
P 		29.8
(-2.9)
P 		41.7
(-1.6)
P 		58
(0.3)
P 		81.2
(3)
P 		52
B 69.8
(-1.2)
P 		39.3
(-2.7)
P 		33.5
(-3)
P 		40.8
(-2.6)
P 		78.1
(-0.8)
P 		152.7
(3)
P 		119
C 47.5
(-2)
P 		57.9
(-1.6)
P 		25.1
(-3)
P 		34.1
(-2.6)
P 		63.5
(-1.3)
P 		161
(3)
P 		136
avr 53.2
(-1.6) 		42.1
(-2.3) 		29.5
(-3) 		38.9
(-2.4) 		66.5
(-0.8) 		131.6
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181895_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1105
Sequence Type Exemplar sequence
Representative Public ID T06D10.2 NCBI
Target Description T06D10.2 /REP_DB=WormBase Gene ID /WP=CE25102 /TR=Q9U380 /GB=CAB63306.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060039(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060039 NCBI Caenorhabditis elegans T06D10.2 (T06D10.2) mRNA, complete cds. 11/11 None
SNAP00000013471 ENSEMBL cdna:SNAP chromosome:CEL140:I:9086011:9088135:-1 11/11 None
GENEFINDER00000013473 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9086011:9088135:-1 11/11 None
T06D10.2.1 ENSEMBL cdna:known chromosome:CEL140:I:9085721:9088147:-1 gene:T06D10.2 11/11 None
T06D10.2.2 ENSEMBL cdna:known chromosome:CEL140:I:9085721:9088148:-1 gene:T06D10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9085941-9088066(-) 88.06 100.0
Public Domain and Genome References
Gene Title
Ensembl T06D10.2
Entrez Gene 172730 Entrez gene
SwissProt Q9U380 EMBL-EBI
WormBase CE25102 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.29117.1.S1_S_AT similar to chromatin assembly factor 1, subunit A (p150) cfa
HG-U133A:214426_X_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133A_2:214426_X_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133_PLUS_2:214426_X_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133A:203976_S_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133_PLUS_2:203976_S_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133A_2:203976_S_AT chromatin assembly factor 1, subunit A (p150) hs
HU35KSUBD:RC_H98924_AT chromatin assembly factor 1, subunit A (p150) hs
HUGENEFL:U20979_AT chromatin assembly factor 1, subunit A (p150) hs
U133_X3P:G4885106_3P_A_AT chromatin assembly factor 1, subunit A (p150) hs
U133_X3P:HS.79018.0.S1_3P_A_AT chromatin assembly factor 1, subunit A (p150) hs
HG-FOCUS:203975_S_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133A_2:203975_S_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133_PLUS_2:203975_S_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133A:203975_S_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U95AV2:32589_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133_PLUS_2:229808_AT Chromatin assembly factor 1, subunit A (p150) hs
HG-U133B:229808_AT Chromatin assembly factor 1, subunit A (p150) hs
HG-U95E:87472_AT Chromatin assembly factor 1, subunit A (p150) hs
U133_X3P:HS.79018.1.A1_3P_AT Chromatin assembly factor 1, subunit A (p150) hs
MG-U74AV2:95527_AT chromatin assembly factor 1, subunit A (p150) mm
MU19KSUBA:TC16217_AT Chromatin assembly factor 1, subunit A (p150) (Chaf1a), mRNA mm
MU19KSUBB:TC34407_AT Chromatin assembly factor 1, subunit A (p150) (Chaf1a), mRNA mm
RG-U34B:RC_AI012664_AT similar to chromatin assembly factor-I p150 subunit rn
RAE230A:1373489_AT similar to chromatin assembly factor-I p150 subunit rn
RAT230_2:1373489_AT similar to chromatin assembly factor-I p150 subunit rn
Protein Similarities
Method ID Description E-Value
blast CAB63306 Hypothetical protein T06D10.2 [Caenorhabditis elegans] ref|NP_492440.1| T06D10.2 [Caenorhabditis elegans] 1.0E-130
blast CAE67035 Hypothetical protein CBG12437 [Caenorhabditis briggsae] 5.0E-77
Sequence
Target Sequence 
>C. ELEGANS:181895_S_AT
ttaactcgatcgcttcattcattgaatctgcggcaaaaattgtaccaattgaatcttcaa
aggccagaaatatgaaggcaaagttgttccaatttcatggaaatcgtcgtccacagtact
atggaacatggcgaaagaagtcaaaaattgtatccggatcgtgtccattggcagaagaaa
ttggtattgattataatgttgtatcggatgacgagtgggaagacgaaccttctgatggtg
aagaatgcaattccgatgatgatgctgaaaaggataacgacgatgacgatggtggtgagg
aagatgatggattctttgttccaccgtgttatctttcggatggagaaggtgatgaagatt
cgacatctgataatgacattgctggagataaaaagaaggaaaaacaaccaaaaagaatca
caattgattcggatgatgatgagaattcaacagatgcagccgaacgaaaagctcgtcttg
ctcaacgtgccgaagattgggcaaagagaaccggtaaaaaggaactggcaatgaagccaa
gagctgttggacctgtttttaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAACTCGATCGCTTCATTCATTGA 234 683 833 Antisense
GAAGGCAAAGTTGTTCCAATTTCAT 658 331 906 Antisense
GGAAATCGTCGTCCACAGTACTATG 655 525 931 Antisense
TGTATCCGGATCGTGTCCATTGGCA 615 559 981 Antisense
GACGAGTGGGAAGACGAACCTTCTG 625 223 1042 Antisense
GATGATGGATTCTTTGTTCCACCGT 645 409 1135 Antisense
GTTCCACCGTGTTATCTTTCGGATG 172 441 1150 Antisense
GATGAGAATTCAACAGATGCAGCCG 618 411 1270 Antisense
GATGCAGCCGAACGAAAAGCTCGTC 120 413 1285 Antisense
GTCTTGCTCAACGTGCCGAAGATTG 427 467 1307 Antisense
AAGAGCTGTTGGACCTGTTTTTAAT 23 155 1371 Antisense
Sequence Source Affymetrix Proprietary Database