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[181894_at]

Description Y38H6A.2 /REP_DB=WormBase Gene ID /WP=CE19094 /TR=Q9XWU0 /GB=CAA21554.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 57.3
(-0.1)
A 		107.2
(3)
M 		10
(-3)
A 		106.4
(3)
P 		97
B 5.9
(-3)
A 		53
(3)
A 		5.6
(-3)
A 		45.4
(2)
A 		47
C 54.6
(3)
P 		54.2
(2.8)
A 		41.3
(-3)
A 		52.1
(1.9)
A 		13
avr 39.3
(-0.7) 		71.5
(3) 		19
(-3) 		68
(2.6) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 37.1
(2.8)
A 		38.5
(3)
A 		14.9
(-1)
A 		3
(-3)
A 		37.6
(2.8)
A 		36.6
(2.7)
A 		36
B 45.1
(1.7)
A 		37.3
(-0)
A 		47.8
(2.3)
A 		51.1
(3)
A 		40.8
(0.7)
A 		23.7
(-3)
A 		27
C 39.5
(1)
A 		1.3
(-3)
A 		54.6
(2.6)
A 		49.7
(2.1)
M 		58.1
(3)
A 		24.5
(-0.5)
P 		57
avr 40.6
(1.5) 		25.7
(-3) 		39.1
(1.1) 		34.6
(-0.3) 		45.5
(3) 		28.3
(-2.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 20.9
(2.3)
A 		23.3
(3)
M 		2.6
(-3)
A 		15.6
(0.8)
P 		21
B 1.9
(-2.7)
A 		13.1
(3)
A 		1.3
(-3)
A 		9.7
(1.3)
A 		12
C 18.1
(3)
P 		15.6
(1.4)
A 		14.4
(0.6)
A 		8.8
(-3)
A 		9
avr 13.6
(1) 		17.3
(3) 		6.1
(-3) 		11.4
(-0.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.8
(-0.2)
A 		13.7
(3)
A 		3.2
(-1.9)
A 		0.8
(-3)
A 		11.3
(1.9)
A 		8.9
(0.8)
A 		13
B 15.7
(2.3)
A 		12.4
(-0.3)
A 		11.6
(-0.9)
A 		13.5
(0.6)
A 		16.6
(3)
A 		8.9
(-3)
A 		8
C 14.6
(1.6)
A 		0.4
(-3)
A 		13.9
(1.4)
A 		10
(0.1)
M 		18.8
(3)
A 		8.2
(-0.5)
P 		18
avr 12.4
(0.4) 		8.8
(-2.4) 		9.6
(-1.8) 		8.1
(-3) 		15.6
(3) 		8.7
(-2.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181894_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13385
Sequence Type Exemplar sequence
Representative Public ID Y38H6A.2 NCBI
Target Description Y38H6A.2 /REP_DB=WormBase Gene ID /WP=CE19094 /TR=Q9XWU0 /GB=CAA21554.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075519(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075519 NCBI Caenorhabditis elegans Y38H6A.2 (Y38H6A.2) mRNA, complete cds. 11/11 None
Y38H6A.2 ENSEMBL cdna:known chromosome:CEL140:V:20326949:20329207:-1 gene:Y38H6A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031892 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20327658-20329207(-) 81.18 81.18
Public Domain and Genome References
Gene Title
Ensembl Y38H6A.2
Entrez Gene 189681 Entrez gene
SwissProt Q9XWU0 EMBL-EBI
WormBase CE19094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21554 Hypothetical protein Y38H6A.2 [Caenorhabditis elegans] ref|NP_507920.1| Y38H6A.2 [Caenorhabditis elegans] 1.0E-116
Sequence
Target Sequence 
>C. ELEGANS:181894_AT
gttcgggccaaattttgcgcggagctcgaattttgtacttttttcaatttaaaactaata
gttccgttgcaaataacgttcgctactgcgatggcactggtgtctcgtccatctgtcaaa
cctaccgaatcgtagagacttgtgatacaattccgaatttaggatatatttgctgttgcg
atgctgcaaaaaatcaagtaacaccagaaatccgccgtcaatgtttgatgaaacttgctt
cagtttgttcaattggagaaaccgctgagcctatccggcagaaggttgaagagctcaagg
cgtttcaaataagtataatcatggttagctaccgccaagctcaaggacagaagaagaaag
tctccaaaaatcgaaataaagttcaaatatcaattttttcagaaagtgttgccattttta
ataaaccttacacaactcaacatattgaaacaatatttattttaggtttttcagaatttc
aaaatgagcttcaacttgtaaaaatactcgtatatcttacactgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCGGGCCAAATTTTGCGCGGAGC 365 441 17 Antisense
GCGCGGAGCTCGAATTTTGTACTTT 83 287 33 Antisense
TGCAAATAACGTTCGCTACTGCGAT 403 577 84 Antisense
TACTGCGATGGCACTGGTGTCTCGT 415 647 100 Antisense
TCGTCCATCTGTCAAACCTACCGAA 48 601 121 Antisense
GATATATTTGCTGTTGCGATGCTGC 182 427 179 Antisense
ACACCAGAAATCCGCCGTCAATGTT 572 107 217 Antisense
TGGAGAAACCGCTGAGCCTATCCGG 605 547 270 Antisense
GTTAGCTACCGCCAAGCTCAAGGAC 522 435 340 Antisense
TAAACCTTACACAACTCAACATATT 503 639 438 Antisense
AATACTCGTATATCTTACACTGCAT 109 173 519 Antisense
Sequence Source Affymetrix Proprietary Database