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[181893_at]

Description F56F4.6 /REP_DB=WormBase Gene ID /WP=CE11270 /TR=O01842 /GB=AAB54203.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 16.9
(2.2)
A 		2.3
(-3)
A 		19.1
(3)
A 		9.9
(-0.3)
A 		17
B 2.2
(-3)
A 		2.7
(3)
A 		2.2
(-3)
A 		2.2
(-3)
A 		1
C 2.1
(-2.4)
A 		2
(-2.6)
A 		1.8
(-3)
A 		4.9
(3)
A 		3
avr 7.1
(2.3) 		2.3
(-3) 		7.7
(3) 		5.7
(0.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3.9
(-1.2)
A 		1.9
(-2.8)
A 		4.3
(-0.9)
A 		3
(-1.9)
A 		9.1
(3)
A 		1.7
(-3)
A 		7
B 12.9
(3)
A 		2.6
(-3)
A 		2.6
(-3)
A 		3.4
(-2.5)
A 		4.7
(-1.8)
A 		4.3
(-2)
A 		10
C 1.3
(-3)
A 		2.2
(-2.8)
A 		32.5
(3)
A 		6.9
(-1.9)
A 		23.2
(1.2)
A 		2.3
(-2.8)
A 		31
avr 6
(-0.9) 		2.2
(-3) 		13.1
(3) 		4.4
(-1.8) 		12.3
(2.6) 		2.8
(-2.7) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6.1
(3)
A 		0.5
(-3)
A 		5
(1.8)
A 		1.4
(-2)
A 		6
B 0.7
(3)
A 		0.7
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0
C 0.7
(-0)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.8
(3)
A 		0
avr 2.5
(3) 		0.6
(-3) 		2
(1.4) 		0.9
(-2.1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.7
(-2.3)
A 		0.7
(-2.3)
A 		0.9
(-1.8)
A 		0.7
(-2.3)
A 		2.8
(3)
A 		0.4
(-3)
A 		2
B 4.5
(3)
A 		0.9
(-2.5)
A 		0.6
(-3)
A 		0.9
(-2.5)
A 		1.9
(-1)
A 		1.6
(-1.5)
A 		4
C 0.5
(-3)
A 		0.7
(-2.8)
A 		8.3
(3)
A 		1.4
(-2.3)
A 		7.5
(2.4)
A 		0.8
(-2.8)
A 		8
avr 1.9
(-1) 		0.8
(-3) 		3.3
(1.5) 		1
(-2.6) 		4.1
(3) 		0.9
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181893_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1248
Sequence Type Exemplar sequence
Representative Public ID F56F4.6 NCBI
Target Description F56F4.6 /REP_DB=WormBase Gene ID /WP=CE11270 /TR=O01842 /GB=AAB54203.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059368(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059368 NCBI Caenorhabditis elegans F56F4.6 (F56F4.6) mRNA, complete cds. 11/11 None
GENEFINDER00000027768 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6147351:6148558:-1 9/11 None
SNAP00000027759 ENSEMBL cdna:SNAP chromosome:CEL140:I:6147482:6148130:-1 9/11 None
F56F4.6 ENSEMBL cdna:known chromosome:CEL140:I:6147540:6148579:-1 gene:F56F4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027760 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6147539-6148579(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56F4.6
Entrez Gene 186400 Entrez gene
SwissProt O01842 EMBL-EBI
WormBase CE11270 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54203 Hypothetical protein F56F4.6 [Caenorhabditis elegans] ref|NP_491769.1| F56F4.6 [Caenorhabditis elegans] 1.0E-148
blast CAA22142 Hypothetical protein Y53C10A.9 [Caenorhabditis elegans] ref|NP_493041.1| ABC Transporter family member (abt-5) [Caenorhabditis elegans] 2.0E-95
blast AAB54203 Hypothetical protein F56F4.6 [Caenorhabditis elegans] ref|NP_491769.1| F56F4.6 [Caenorhabditis elegans] 3.0E-90
blast CAB05222 Hypothetical protein F55G11.9 [Caenorhabditis elegans] ref|NP_502478.1| ABC Transporter family member (abt-3) [Caenorhabditis elegans] 3.0E-89
blast CAA22142 Hypothetical protein Y53C10A.9 [Caenorhabditis elegans] ref|NP_493041.1| ABC Transporter family member (abt-5) [Caenorhabditis elegans] 1.0E-82
blast CAE72956 Hypothetical protein CBG20290 [Caenorhabditis briggsae] 2.0E-74
blast CAA22142 Hypothetical protein Y53C10A.9 [Caenorhabditis elegans] ref|NP_493041.1| ABC Transporter family member (abt-5) [Caenorhabditis elegans] 1.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 8.4E-23
Pfam IPR003439 EMBL-EBI ABC transporter 8.4E-23
Pfam IPR003439 EMBL-EBI ABC transporter 3.9E-25
Sequence
Target Sequence 
>C. ELEGANS:181893_AT
accatacacattggttgcccacagtttgatgcgatgctccagcaaatctcatgcaggcag
accggtggtcaaaaacggaagatctcggtcggaatcgcgttaatgtctcgtgcctcgtgt
atcattcttgatgagccaacagctggaatcgatccgcgtgctcgccgtgaaatttgggat
atcattcatgagatgcgggaacaggggaaatgctcaatcgttcttacttctcattcaatg
gaagaatgtgaagctttgtgtacacgtatcggaattcttcatagaggagaaatgattgca
ttaggaactagtcaatcattgaaatctcaatatggtaacacgtacatgatgactcttgtt
ctcaacagtttggaaggtttgacatcggttattgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCATACACATTGGTTGCCCACAGT 211 85 175 Antisense
ATCTCATGCAGGCAGACCGGTGGTC 66 31 220 Antisense
ACGGAAGATCTCGGTCGGAATCGCG 665 95 249 Antisense
CGGAATCGCGTTAATGTCTCGTGCC 710 241 264 Antisense
ATGAGCCAACAGCTGGAATCGATCC 658 45 305 Antisense
GATGCGGGAACAGGGGAAATGCTCA 102 413 366 Antisense
AAATGCTCAATCGTTCTTACTTCTC 479 119 382 Antisense
TCGTTCTTACTTCTCATTCAATGGA 82 605 392 Antisense
GGTAACACGTACATGATGACTCTTG 134 505 508 Antisense
GATGACTCTTGTTCTCAACAGTTTG 61 413 522 Antisense
GGAAGGTTTGACATCGGTTATTGCA 245 531 546 Antisense
Sequence Source Affymetrix Proprietary Database