[Home] | [Total List]

[181892_at]

Description F36H5.3 /REP_DB=WormBase Gene ID /WP=CE09960 /TR=P91298 /GB=AAK31514.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 23.4
(-2.9)
A 		25.4
(-2.9)
A 		21.1
(-3)
A 		199.8
(3)
P 		179
B 37.3
(-1.4)
A 		34.1
(-1.6)
A 		15.1
(-3)
A 		97.2
(3)
P 		82
C 39
(0.3)
A 		4.8
(-3)
A 		12.8
(-2.2)
A 		66.2
(3)
P 		61
avr 33.2
(-2) 		21.4
(-2.7) 		16.3
(-3) 		121.1
(3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 43.3
(0.6)
A 		2.8
(-3)
A 		40.1
(0.3)
A 		57.5
(1.8)
A 		56.5
(1.8)
A 		70.6
(3)
A 		68
B 53.5
(0.7)
A 		23.8
(-1.8)
A 		10.2
(-3)
A 		40.8
(-0.4)
A 		80.5
(3)
A 		72.9
(2.4)
M 		70
C 68.2
(3)
A 		60.7
(2.3)
A 		5.2
(-3)
A 		31.8
(-0.5)
A 		34
(-0.3)
A 		42.6
(0.6)
P 		63
avr 55
(2) 		29.1
(-1.5) 		18.5
(-3) 		43.4
(0.4) 		57
(2.3) 		62
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 8.5
(-2.2)
A 		5.5
(-3)
A 		5.5
(-3)
A 		29.2
(3)
P 		24
B 11.9
(-0.1)
A 		8.4
(-1.3)
A 		3.5
(-3)
A 		20.7
(3)
P 		17
C 12.9
(3)
A 		1.4
(-3)
A 		4.5
(-1.4)
A 		11.2
(2.1)
P 		12
avr 11.1
(-0.5) 		5.1
(-2.8) 		4.5
(-3) 		20.4
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 8
(-0.4)
A 		1
(-3)
A 		8.7
(-0.1)
A 		14.6
(2)
A 		17
(2.9)
A 		17.2
(3)
A 		16
B 18.6
(0.2)
A 		7.9
(-1.9)
A 		2.5
(-3)
A 		10.8
(-1.4)
A 		32.7
(3)
A 		27.2
(1.9)
M 		30
C 25.3
(3)
A 		18.5
(1.3)
A 		1.3
(-3)
A 		6.4
(-1.7)
A 		11
(-0.6)
A 		14.3
(0.3)
P 		24
avr 17.3
(1.9) 		9.1
(-1.2) 		4.2
(-3) 		10.6
(-0.6) 		20.2
(3) 		19.6
(2.8) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181892_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5851
Sequence Type Exemplar sequence
Representative Public ID F36H5.3 NCBI
Target Description F36H5.3 /REP_DB=WormBase Gene ID /WP=CE09960 /TR=P91298 /GB=AAK31514.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061672
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000028524 ENSEMBL cdna:SNAP chromosome:CEL140:II:1763499:1766558:1 11/11 None
GENEFINDER00000028539 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1763499:1766558:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061672 8/11 Cross Hyb Matching Probes None
F36H5.3 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1763373-1766557(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31514 Hypothetical protein F36H5.3 [Caenorhabditis elegans] ref|NP_494073.2| F36H5.3 [Caenorhabditis elegans] 0.0
blast AAK31520 Hypothetical protein F36H5.1 [Caenorhabditis elegans] ref|NP_494075.1| F36H5.1 [Caenorhabditis elegans] 0.0
blast T25744 hypothetical protein F36H5.1 - Caenorhabditis elegans 1.0E-177
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.4E-19
Pfam IPR002083 EMBL-EBI MATH 4.4E-30
Pfam IPR002083 EMBL-EBI MATH 3.5E-25
Pfam IPR002083 EMBL-EBI MATH 8.8E-22
Pfam IPR002083 EMBL-EBI MATH 3.5E-40
Pfam IPR002083 EMBL-EBI MATH 4.4E-19
Pfam IPR002083 EMBL-EBI MATH 4.4E-30
Pfam IPR002083 EMBL-EBI MATH 3.5E-25
Pfam IPR002083 EMBL-EBI MATH 8.8E-22
Pfam IPR002083 EMBL-EBI MATH 3.5E-40
Sequence
Target Sequence 
>C. ELEGANS:181892_AT
atcacacagtatttcgagcacactttcgataaaccaggctcaagtggggattcaaagttc
ttgagatgggaggatatggtgaataattatgcgatagaggacagtgtcagagttgaagct
tgtgtgaggtttattcatgtgatagctactcctccgcagaaatcatttgcaatgttttat
actctcggaaacctctccaatgttctggaagaggaacatcacttcagtctaaccgagaag
cactttgagattccatggagaatttcggtgcaacgaaaacgcatgtgcattttgatctac
ctgcattgcgacaagccttacagcaacaacgaagactggtcgattcaagctgaagtacat
cttattttggtttcagacacaggaagaacatctactgatagggtcactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACACAGTATTTCGAGCACACTT 496 27 1942 Antisense
GCACACTTTCGATAAACCAGGCTCA 88 315 1959 Antisense
TATTCATGTGATAGCTACTCCTCCG 165 663 2073 Antisense
TACTCCTCCGCAGAAATCATTTGCA 216 647 2088 Antisense
ATTTGCAATGTTTTATACTCTCGGA 598 17 2106 Antisense
TACTCTCGGAAACCTCTCCAATGTT 207 645 2121 Antisense
GGAACATCACTTCAGTCTAACCGAG 74 527 2154 Antisense
ACGCATGTGCATTTTGATCTACCTG 309 89 2220 Antisense
TGATCTACCTGCATTGCGACAAGCC 151 565 2234 Antisense
GCGACAAGCCTTACAGCAACAACGA 431 287 2249 Antisense
GAACATCTACTGATAGGGTCACTCA 573 349 2327 Antisense
Sequence Source Affymetrix Proprietary Database