[Home] | [Total List]

[181891_s_at]

Description Y54E2A.5 /REP_DB=WormBase Gene ID /WP=CE20304 /TR=Q9XWI9 /GB=CAA21678.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 16      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.2
(-3)
A 		2.8
(-1.9)
A 		3.4
(-0.8)
A 		5.4
(3)
A 		3
B 2.4
(-3)
A 		4.7
(1.6)
A 		5.4
(3)
A 		5
(2.2)
A 		3
C 2.3
(-3)
A 		3.4
(-2)
A 		4
(-1.5)
A 		9.2
(3)
A 		7
avr 2.3
(-3) 		3.6
(-1.1) 		4.3
(-0.1) 		6.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.5
(-2.8)
A 		2.5
(-2.8)
A 		2.2
(-3)
A 		3.4
(-2.3)
A 		10.3
(1.5)
A 		12.9
(3)
A 		11
B 4.4
(-0.9)
A 		2.6
(-3)
A 		5
(-0.2)
A 		5.4
(0.2)
A 		3.2
(-2.3)
A 		7.8
(3)
A 		5
C 2.5
(-3)
A 		2.5
(-3)
A 		3.1
(-2.2)
A 		7
(3)
A 		3.3
(-1.9)
A 		3.2
(-2.1)
A 		5
avr 3.1
(-2.3) 		2.5
(-3) 		3.4
(-2) 		5.3
(0.1) 		5.6
(0.4) 		8
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.8
(1)
A 		0.6
(-3)
A 		0.9
(3)
A 		0.8
(1)
A 		0
B 0.8
(-3)
A 		1.2
(3)
A 		1.2
(3)
A 		1.1
(1.5)
A 		0
C 0.8
(-3)
A 		1
(-1.5)
A 		1.4
(1.5)
A 		1.6
(3)
A 		1
avr 0.8
(-3) 		0.9
(-1.5) 		1.2
(3) 		1.2
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.9
(-2.1)
A 		0.5
(-3)
A 		0.9
(-2.1)
A 		3.1
(3)
A 		3.1
(3)
A 		3
B 1.5
(-1.2)
A 		0.9
(-3)
A 		1.2
(-2.1)
A 		1.4
(-1.5)
A 		1.3
(-1.8)
A 		2.9
(3)
A 		2
C 0.9
(-1.3)
A 		0.7
(-3)
A 		0.8
(-2.1)
A 		1.4
(3)
A 		1.1
(0.4)
A 		1.1
(0.4)
A 		1
avr 1
(-2.3) 		0.8
(-3) 		0.8
(-3) 		1.2
(-1.5) 		1.8
(0.8) 		2.4
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181891_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2922
Sequence Type Exemplar sequence
Representative Public ID Y54E2A.5 NCBI
Target Description Y54E2A.5 /REP_DB=WormBase Gene ID /WP=CE20304 /TR=Q9XWI9 /GB=CAA21678.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064660(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064660 NCBI Caenorhabditis elegans Y54E2A.5 (Y54E2A.5) mRNA, complete cds. 11/11 None
SNAP00000025430 ENSEMBL cdna:SNAP chromosome:CEL140:II:14752868:14761209:-1 9/11 None
GENEFINDER00000025452 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14755869:14757637:-1 11/11 None
Y54E2A.5 ENSEMBL cdna:known chromosome:CEL140:II:14755869:14757701:-1 gene:Y54E2A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14755865-14757634(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E2A.5
Entrez Gene 175134 Entrez gene
SwissProt Q9XWI9 EMBL-EBI
WormBase CE20304 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21678 Hypothetical protein Y54E2A.5 [Caenorhabditis elegans] ref|NP_497061.1| Y54E2A.5 [Caenorhabditis elegans] 1.0E-133
blast CAA21678 Hypothetical protein Y54E2A.5 [Caenorhabditis elegans] ref|NP_497061.1| Y54E2A.5 [Caenorhabditis elegans] 1.0E-111
blast CAA21677 Hypothetical protein Y54E2A.3 [Caenorhabditis elegans] ref|NP_497059.1| TACC (transforming acid coiled coil) protein family member (tac-1) [Caenorhabditis elegans] gb|AAG49387.1| 2P40 [Caenorhabditis elegans] 1.0E-109
blast CAE60617 Hypothetical protein CBG04258 [Caenorhabditis briggsae] 8.0E-71
blast CAE60615 Hypothetical protein CBG04256 [Caenorhabditis briggsae] 9.0E-52
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497061.1 1 208-230
Y54E2A.5 1 208-230
SNAP00000025430 1 185-204
GENEFINDER00000025452 1 208-230
Sequence
Target Sequence 
>C. ELEGANS:181891_S_AT
ttttgtcgtgtcggatttcggccattcaaatactcgcaaaaagtccggaatgacttccag
cttctacgagttaaagctcaagaactggaaattctgtcgacaaatcggatactcggaata
cgaagcgacgcggacctgagcacgctgatctcatggcaaagcgagctgtgtcgtgacgat
accgttggcttcgtgctggataagaacgtcagcgagtatcgtgtcagctgcgtgtggacg
ggctcctcacagcttggacagtgccgtgcggttccgccgaagtacatggcggaagtgtac
agctttattgaggaggacgagtgggaagagaagttgcagaaagtgcgaaacgccatcgga
tgtgacacctcggcagccgtcaacttccaggaatttgtagaaatcaagccaccgaaaacg
aatggagctcatggtgcatcgattagaaaatccggaggaaaaacgaatacaaccgcaatt
cgctatgtgaaacgtcacagaacattgtccgaattcgtgatttgcaatgatcgttgtgtt
cagggaggaatcggatattcagcctcgttggtcatcattttggcgttggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGTCGTGTCGGATTTCGGCCAT 274 671 100 Antisense
TTTCGGCCATTCAAATACTCGCAAA 126 671 115 Antisense
GTCCGGAATGACTTCCAGCTTCTAC 128 477 142 Antisense
ATACGAAGCGACGCGGACCTGAGCA 302 23 217 Antisense
GAGCACGCTGATCTCATGGCAAAGC 57 391 237 Antisense
TGTCGTGACGATACCGTTGGCTTCG 185 557 268 Antisense
AGCGAGTATCGTGTCAGCTGCGTGT 180 83 310 Antisense
CCGTGCGGTTCCGCCGAAGTACATG 247 263 363 Antisense
GAAACGCCATCGGATGTGACACCTC 101 359 446 Antisense
TCGGATATTCAGCCTCGTTGGTCAT 626 601 650 Antisense
GTTGGTCATCATTTTGGCGTTGGCA 213 437 666 Antisense
Sequence Source Affymetrix Proprietary Database