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[181890_at]

Description C55B6.4 /REP_DB=WormBase Gene ID /WP=CE09010 /TR=P91187 /GB=AAB42305.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      4grp_high_8_8 > 26      6grp_total > 72      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 45.1
(-1.1)
A 		56.2
(3)
P 		40.7
(-2.7)
P 		39.9
(-3)
P 		16
B 91.3
(3)
P 		47.7
(-1.6)
P 		33.9
(-3)
M 		58.7
(-0.4)
P 		57
C 49
(-0.2)
P 		47.1
(-0.6)
P 		35.2
(-3)
P 		64.7
(3)
P 		30
avr 61.8
(3) 		50.3
(0.3) 		36.6
(-3) 		54.4
(1.2) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 30.3
(-3)
A 		33.3
(-2.3)
P 		39.9
(-0.6)
P 		40.8
(-0.4)
A 		54.5
(3)
P 		53.5
(2.8)
P 		24
B 32.3
(-0.4)
P 		52.8
(3)
P 		39
(0.7)
P 		51.6
(2.8)
P 		51.2
(2.7)
P 		16.9
(-3)
A 		36
C 23.2
(-3)
A 		58.6
(3)
P 		56.7
(2.7)
A 		53.1
(2.1)
P 		25.7
(-2.6)
A 		23.5
(-2.9)
P 		35
avr 28.6
(-3) 		48.2
(2.9) 		45.2
(2) 		48.5
(3) 		43.8
(1.6) 		31.3
(-2.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 16.4
(3)
A 		12.2
(0.6)
P 		10.6
(-0.3)
P 		5.8
(-3)
P 		11
B 29.1
(3)
P 		11.8
(-1.9)
P 		7.9
(-3)
M 		12.5
(-1.7)
P 		21
C 16.2
(3)
P 		13.5
(-0.1)
P 		12.3
(-1.4)
P 		10.9
(-3)
P 		5
avr 20.6
(3) 		12.5
(-1.5) 		10.3
(-2.7) 		9.7
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.6
(-3)
A 		11.8
(0.4)
P 		8.7
(-1.3)
P 		10.3
(-0.4)
A 		16.4
(3)
P 		13
(1.1)
P 		11
B 11.2
(-1)
P 		17.6
(1.7)
P 		9.5
(-1.7)
P 		13.7
(0.1)
P 		20.8
(3)
P 		6.3
(-3)
A 		15
C 8.6
(-2.6)
A 		17.9
(3)
P 		14.4
(0.9)
A 		10.7
(-1.3)
P 		8.3
(-2.8)
A 		7.9
(-3)
P 		10
avr 8.5
(-3) 		15.8
(3) 		10.9
(-1) 		11.6
(-0.5) 		15.2
(2.5) 		9.1
(-2.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181890_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16381
Sequence Type Exemplar sequence
Representative Public ID C55B6.4 NCBI
Target Description C55B6.4 /REP_DB=WormBase Gene ID /WP=CE09010 /TR=P91187 /GB=AAB42305.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076806(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076806 NCBI Caenorhabditis elegans C55B6.4 (C55B6.4) mRNA, complete cds. 11/11 None
C55B6.4 ENSEMBL cdna:known chromosome:CEL140:X:7187303:7188430:-1 gene:C55B6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7187301-7188429(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C55B6.4
Entrez Gene 183839 Entrez gene
SwissProt P91187 EMBL-EBI
WormBase CE09010 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42305 Hypothetical protein C55B6.4 [Caenorhabditis elegans] ref|NP_509207.1| C55B6.4 [Caenorhabditis elegans] 8.0E-85
Sequence
Target Sequence 
>C. ELEGANS:181890_AT
tccggtcccaaaccatctgattagatatttgaacgcctataaaacttgtgtcaacttgtg
tcaaacttttactagacaaaatttaacgtttccacatattctgactattatgaatattgc
aaacaatttttacttttctttgatgtcaaatcaaactccctattcgaagaagaaaaataa
cgacaagtcaccatggtttgaaacattagaaatttgtcttcaaccatcaacaaactctac
agtttcaaacgtactatataggccgatcactgacccttccgatgatagaatttttgtcgt
aactaacaaaaacgtggatggctatgtgaaacccccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGGTCCCAAACCATCTGATTAGA 307 593 21 Antisense
AACTTGTGTCAACTTGTGTCAAACT 123 139 63 Antisense
AACGTTTCCACATATTCTGACTATT 7 145 105 Antisense
TTTTTACTTTTCTTTGATGTCAAAT 268 675 147 Antisense
GTCAAATCAAACTCCCTATTCGAAG 271 465 165 Antisense
ATAACGACAAGTCACCATGGTTTGA 287 1 197 Antisense
AGAAATTTGTCTTCAACCATCAACA 248 73 228 Antisense
AACTCTACAGTTTCAAACGTACTAT 267 139 253 Antisense
TATATAGGCCGATCACTGACCCTTC 284 661 275 Antisense
TCACTGACCCTTCCGATGATAGAAT 332 627 287 Antisense
GTGGATGGCTATGTGAAACCCCCTA 372 489 334 Antisense
Sequence Source Affymetrix Proprietary Database