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[181889_at]

Description T21G5.5 /REP_DB=WormBase Gene ID /WP=CE13896 /TR=O02065 /GB=AAB52897.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_high_8_8 > 51      6grp_highest_nonorm > 70      6grp_total > 13      4grp_total > 52      6grp_highest_sub > 02      6grp_cgc > 30      6grp_high1_sub > 02      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 408.4
(3)
P 		363.2
(1.2)
P 		399.2
(2.6)
P 		257.1
(-3)
P 		151
B 384.1
(2.5)
P 		394.8
(3)
P 		380.5
(2.3)
P 		272.4
(-3)
P 		122
C 411.2
(1)
P 		507.3
(3)
P 		389.9
(0.5)
P 		220.2
(-3)
A 		287
avr 401.2
(2.3) 		421.8
(3) 		389.9
(1.9) 		249.9
(-3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 315
(0.7)
P 		391.3
(3)
P 		229.9
(-1.9)
P 		326.7
(1.1)
P 		224.3
(-2)
P 		192.1
(-3)
P 		199
B 329.3
(2.5)
P 		343.8
(3)
P 		326.2
(2.4)
P 		271.1
(0.5)
P 		215.1
(-1.4)
P 		167.8
(-3)
P 		176
C 360.7
(2.3)
P 		383.5
(3)
P 		341.5
(1.8)
P 		321.6
(1.2)
P 		221.3
(-1.8)
P 		178.7
(-3)
P 		205
avr 335
(1.8) 		372.9
(3) 		299.2
(0.7) 		306.5
(0.9) 		220.2
(-1.7) 		179.5
(-3) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 148.7
(3)
P 		78.8
(-0.8)
P 		104.4
(0.6)
P 		37.6
(-3)
P 		111
B 122.5
(3)
P 		97.5
(0.7)
P 		88.2
(-0.2)
P 		58.1
(-3)
P 		64
C 136.1
(2.5)
P 		145.9
(3)
P 		135.9
(2.4)
P 		37.1
(-3)
A 		109
avr 135.8
(3) 		107.4
(1.1) 		109.5
(1.3) 		44.3
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 58.1
(-2.3)
P 		139.2
(3)
P 		50.1
(-2.8)
P 		82.9
(-0.7)
P 		67.7
(-1.6)
P 		46.8
(-3)
P 		92
B 114.6
(3)
P 		114.4
(3)
P 		79.2
(-1.1)
P 		71.8
(-1.9)
P 		87.4
(-0.1)
P 		62.6
(-3)
P 		52
C 133.7
(3)
P 		117
(1.6)
P 		86.9
(-0.8)
P 		64.7
(-2.6)
P 		71.6
(-2)
P 		59.8
(-3)
P 		74
avr 102.1
(1.1) 		123.5
(3) 		72.1
(-1.6) 		73.1
(-1.5) 		75.6
(-1.3) 		56.4
(-3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181889_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1766
Sequence Type Exemplar sequence
Representative Public ID T21G5.5 NCBI
Target Description T21G5.5 /REP_DB=WormBase Gene ID /WP=CE13896 /TR=O02065 /GB=AAB52897.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026455(11), NM_001026456(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026455 NCBI Caenorhabditis elegans STAR (RNA binding protein) family member (star-2) (star-2) mRNA, complete cds. 11/11 None
NM_001026456 NCBI Caenorhabditis elegans STAR (RNA binding protein) family member (star-2) (star-2) mRNA, complete cds. 11/11 None
SNAP00000016514 ENSEMBL cdna:SNAP chromosome:CEL140:I:6887108:6890045:-1 11/11 None
GENEFINDER00000016515 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6887108:6891244:-1 11/11 None
T21G5.5b ENSEMBL cdna:known chromosome:CEL140:I:6887108:6891100:-1 gene:T21G5.5 11/11 None
T21G5.5c ENSEMBL cdna:known chromosome:CEL140:I:6887108:6890133:-1 gene:T21G5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026454 8/11 Cross Hyb Matching Probes None
T21G5.5a 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
188703 3 2 NM_001026455 181889_at (11)
NM_001026456 181889_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6887038-6891031(-) 100.0 100.0
Public Domain and Genome References
Ensembl T21G5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU20839 Star (rna binding protein) family protein 2, isoform c [Caenorhabditis elegans] ref|NP_001021627.1| STAR (RNA binding protein) family member (star-2) [Caenorhabditis elegans] 1.0E-176
blast AAU20839 Star (rna binding protein) family protein 2, isoform c [Caenorhabditis elegans] ref|NP_001021627.1| STAR (RNA binding protein) family member (star-2) [Caenorhabditis elegans] 1.0E-171
blast AAP68907 Star (rna binding protein) family protein 2, isoform b [Caenorhabditis elegans] ref|NP_001021626.1| STAR (RNA binding protein) family member (star-2) [Caenorhabditis elegans] 1.0E-150
blast AAP68907 Star (rna binding protein) family protein 2, isoform b [Caenorhabditis elegans] ref|NP_001021626.1| STAR (RNA binding protein) family member (star-2) [Caenorhabditis elegans] 1.0E-144
blast AAU20839 Star (rna binding protein) family protein 2, isoform c [Caenorhabditis elegans] ref|NP_001021627.1| STAR (RNA binding protein) family member (star-2) [Caenorhabditis elegans] 1.0E-143
blast AAP68907 Star (rna binding protein) family protein 2, isoform b [Caenorhabditis elegans] ref|NP_001021626.1| STAR (RNA binding protein) family member (star-2) [Caenorhabditis elegans] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 1.1E-4
Pfam IPR004087 EMBL-EBI KH 1.1E-4
Pfam IPR004087 EMBL-EBI KH 1.1E-4
Sequence
Target Sequence 
>C. ELEGANS:181889_AT
gatcagagtgctcttgcagctgcacaattggctgctgttaagcatcaacaacaaccattt
gccgccgcacttcaagcggctgcacttcaacgtggagttcttccaatgatggctaatgga
ttatctcgttcaccaacaatggctgtctgtggagctccaattgtaatgagcccatctgga
agagcctcttctgctggtgcaactgccacttcacaagctgctttgattatgcaacaacag
tcacagctacatgctgcaaatgctggaaatgcagctctacagcagcaagctgctctcttg
caacagcaacaggctgctgaatatcaacaacttttgttaagccaagccggactttatgat
ttctctgccatgcaacagcaatatgcagcagttggacagaatgctgctgtcgccgctgct
caagcacaagctcaagctcaatatggagctcttgctgctgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAGAGTGCTCTTGCAGCTGCAC 202 421 655 Antisense
GCATCAACAACAACCATTTGCCGCC 175 309 696 Antisense
ACTTCAAGCGGCTGCACTTCAACGT 72 103 723 Antisense
GATTATCTCGTTCACCAACAATGGC 631 429 773 Antisense
GGCTGTCTGTGGAGCTCCAATTGTA 558 539 795 Antisense
ATGAGCCCATCTGGAAGAGCCTCTT 398 45 820 Antisense
TGCCACTTCACAAGCTGCTTTGATT 242 587 858 Antisense
GCAGCAAGCTGCTCTCTTGCAACAG 509 313 936 Antisense
AGCCGGACTTTATGATTTCTCTGCC 572 83 999 Antisense
TGGACAGAATGCTGCTGTCGCCGCT 133 547 1047 Antisense
CAATATGGAGCTCTTGCTGCTGCAG 444 181 1093 Antisense
Sequence Source Affymetrix Proprietary Database