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[181888_at]

Description T05C1.3 /REP_DB=WormBase Gene ID /WP=CE02861 /TR=Q22219 /GB=AAA68391.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_high_8_8 > 46      6grp_highest_nonorm > 53      6grp_total > 81      4grp_total > 49      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 643
1 2 3 4 range
A 78.8
(-3)
A 		692.6
(3)
P 		552.1
(1.6)
P 		164.9
(-2.2)
P 		614
B 49.8
(-3)
A 		691.8
(3)
P 		642.5
(2.5)
P 		131.3
(-2.2)
P 		642
C 51.2
(-3)
P 		635
(2.9)
P 		646.7
(3)
P 		187.5
(-1.6)
P 		596
avr 59.9
(-3) 		673.1
(3) 		613.8
(2.4) 		161.2
(-2) 		613

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1744
1 2 3 4 5 6 range
A 475.9
(-1.8)
P 		431.9
(-2)
P 		1096.3
(0.6)
P 		1709.9
(3)
P 		1075
(0.5)
P 		170.6
(-3)
P 		1539
B 341.7
(-2.3)
P 		540.2
(-1.5)
P 		998.1
(0.3)
P 		1671.1
(3)
P 		1223.4
(1.2)
P 		159.3
(-3)
P 		1512
C 284.2
(-2.6)
P 		466.4
(-2)
P 		687.1
(-1.2)
P 		1902.9
(3)
P 		930.3
(-0.4)
P 		177.3
(-3)
P 		1726
avr 367.3
(-2.3) 		479.5
(-1.8) 		927.2
(-0.1) 		1761.3
(3) 		1076.2
(0.4) 		169.1
(-3) 		1592
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 28.7
(-2.8)
A 		150.3
(3)
P 		144.3
(2.7)
P 		24.1
(-3)
P 		126
B 15.9
(-3)
A 		170.9
(3)
P 		148.9
(2.1)
P 		28
(-2.5)
P 		155
C 16.9
(-3)
P 		182.6
(1.8)
P 		225.4
(3)
P 		31.6
(-2.6)
P 		209
avr 20.5
(-3) 		167.9
(2.8) 		172.9
(3) 		27.9
(-2.7) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 456
1 2 3 4 5 6 range
A 87.7
(-2.3)
P 		153.6
(-1.3)
P 		238.8
(0)
P 		433.7
(3)
P 		324.4
(1.3)
P 		41.5
(-3)
P 		392
B 118.9
(-2.2)
P 		179.8
(-1.3)
P 		242.4
(-0.5)
P 		442.6
(2.3)
P 		497
(3)
P 		59.4
(-3)
P 		438
C 105.4
(-2.1)
P 		142.3
(-1.5)
P 		174.9
(-0.9)
P 		382.7
(3)
P 		301
(1.5)
P 		59.3
(-3)
P 		323
avr 104
(-2.2) 		158.6
(-1.3) 		218.7
(-0.3) 		419.7
(3) 		374.1
(2.3) 		53.4
(-3) 		366
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181888_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4050
Sequence Type Exemplar sequence
Representative Public ID T05C1.3 NCBI
Target Description T05C1.3 /REP_DB=WormBase Gene ID /WP=CE02861 /TR=Q22219 /GB=AAA68391.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062392(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062392 NCBI Caenorhabditis elegans T05C1.3 (T05C1.3) mRNA, complete cds. 11/11 None
SNAP00000008477 ENSEMBL cdna:SNAP chromosome:CEL140:II:4487783:4489370:-1 11/11 None
GENEFINDER00000008480 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4487783:4489370:-1 11/11 None
T05C1.3 ENSEMBL cdna:known chromosome:CEL140:II:4487783:4489370:-1 gene:T05C1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4487781-4489369(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05C1.3
Entrez Gene 188114 Entrez gene
SwissProt Q22219 EMBL-EBI
WormBase CE02861 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68391 Hypothetical protein T05C1.3 [Caenorhabditis elegans] ref|NP_494793.1| T05C1.3 [Caenorhabditis elegans] 1.0E-130
blast CAE67882 Hypothetical protein CBG13477 [Caenorhabditis briggsae] 1.0E-114
Sequence
Target Sequence 
>C. ELEGANS:181888_AT
caattcggaagtctcattgccatccgtcgattattcacaagaagaccgtcactcgtgtaa
cactttaatcggtgatgaatggtcacagaacggagacgttatcattcaaccactacaaaa
gccatcaaacactccaactacacaatatgaacgcattattactcggagagagattgcgaa
cactgaatccgatttgtgtaaaaagctttcccttatcgtcgatcttgtttcggattttgc
caacgatgcgaatcggttgtacgagggagctgatgaactattaaaagagctgagaacaaa
aattcgggtgtacatttattttttggatgtcgaaatggcggatgttgaaaagctgttaag
gttcaatgtggatagatccacgatttgtgatgagagaattgattggcttttgcatttcac
aaagtgtcataaagaaatgcgtcgcgtcctcaacgaactctcggaagaagtttgcgaaga
tcttgagtcatgcctagaaatgagagccaagggagtgatcggaaagaagccaagttctat
aattctgtcaacactgtctggaatgagaaatggaatgatgactgcctcgaagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTCGGAAGTCTCATTGCCATCC 471 177 90 Antisense
CATTGCCATCCGTCGATTATTCACA 521 217 104 Antisense
GAAGACCGTCACTCGTGTAACACTT 308 337 130 Antisense
GGAGACGTTATCATTCAACCACTAC 316 517 181 Antisense
TAAAAAGCTTTCCCTTATCGTCGAT 45 641 288 Antisense
GTCGATCTTGTTTCGGATTTTGCCA 55 473 307 Antisense
TAAAGAAATGCGTCGCGTCCTCAAC 177 637 519 Antisense
CGTCCTCAACGAACTCTCGGAAGAA 543 245 534 Antisense
GCGAAGATCTTGAGTCATGCCTAGA 408 289 563 Antisense
ATAATTCTGTCAACACTGTCTGGAA 169 27 628 Antisense
ATGGAATGATGACTGCCTCGAAGCT 332 51 659 Antisense
Sequence Source Affymetrix Proprietary Database