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[181887_at]

Description C01G12.7 /REP_DB=WormBase Gene ID /WP=CE15576 /TR=O45238 /GB=CAB03817.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 07      4grp_high_8_8 > 16      6grp_total > 07      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 416
1 2 3 4 range
A 456.6
(3)
P 		130.4
(-2.7)
P 		113.6
(-3)
P 		317.9
(0.6)
P 		343
B 467.8
(3)
P 		142
(-1.7)
P 		51.7
(-3)
A 		230.5
(-0.4)
P 		416
C 451.5
(3)
P 		104.9
(-2.5)
A 		74.7
(-3)
A 		246.9
(-0.3)
P 		377
avr 458.6
(3) 		125.8
(-2.3) 		80
(-3) 		265.1
(-0.1) 		379

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 218.1
(3)
P 		170.9
(0.6)
P 		99.1
(-3)
P 		129.5
(-1.5)
A 		110
(-2.5)
P 		128.5
(-1.5)
P 		119
B 210.9
(3)
P 		121.5
(-1.4)
P 		108.9
(-2)
P 		155.5
(0.3)
P 		107.5
(-2.1)
P 		89.5
(-3)
P 		121
C 222.8
(3)
P 		138.9
(0)
P 		155.4
(0.6)
P 		127.6
(-0.4)
P 		75.8
(-2.3)
A 		54.8
(-3)
P 		168
avr 217.3
(3) 		143.8
(-0.5) 		121.1
(-1.6) 		137.5
(-0.8) 		97.8
(-2.7) 		90.9
(-3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 166.2
(3)
P 		28.3
(-3)
P 		29.7
(-2.9)
P 		46.5
(-2.2)
P 		138
B 149.2
(3)
P 		35.1
(-2)
P 		12
(-3)
A 		49.1
(-1.4)
P 		137
C 149.5
(3)
P 		30.2
(-2.8)
A 		26
(-3)
A 		41.6
(-2.2)
P 		124
avr 155
(3) 		31.2
(-2.6) 		22.6
(-3) 		45.7
(-2) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 40.2
(-0.2)
P 		60.8
(3)
P 		21.6
(-3)
P 		32.8
(-1.3)
A 		33.2
(-1.2)
P 		31.3
(-1.5)
P 		39
B 73.4
(3)
P 		40.4
(-1.2)
P 		26.5
(-3)
P 		41.2
(-1.1)
P 		43.7
(-0.8)
P 		33.4
(-2.1)
P 		47
C 82.6
(3)
P 		42.4
(-0.8)
P 		39.6
(-1)
P 		25.7
(-2.3)
P 		24.5
(-2.4)
A 		18.4
(-3)
P 		64
avr 65.4
(3) 		47.9
(0.2) 		29.2
(-2.8) 		33.2
(-2.1) 		33.8
(-2) 		27.7
(-3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181887_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3357
Sequence Type Exemplar sequence
Representative Public ID C01G12.7 NCBI
Target Description C01G12.7 /REP_DB=WormBase Gene ID /WP=CE15576 /TR=O45238 /GB=CAB03817.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064632(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064632 NCBI Caenorhabditis elegans C01G12.7 (C01G12.7) mRNA, complete cds. 11/11 None
SNAP00000024271 ENSEMBL cdna:SNAP chromosome:CEL140:II:14588585:14591646:-1 11/11 None
GENEFINDER00000024285 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14588585:14591646:-1 11/11 None
C01G12.7 ENSEMBL cdna:known chromosome:CEL140:II:14588535:14591784:-1 gene:C01G12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14588581-14591643(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G12.7
Entrez Gene 182089 Entrez gene
SwissProt O45238 EMBL-EBI
WormBase CE31150 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03817 Hypothetical protein C01G12.7 [Caenorhabditis elegans] ref|NP_497033.2| C01G12.7 [Caenorhabditis elegans] 0.0
blast CAE65913 Hypothetical protein CBG11080 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497033.2 7 112-134,147-169,189-211,231-253,286-308,329-351,361-383
C01G12.7 7 112-134,147-169,189-211,231-253,286-308,329-351,361-383
SNAP00000024271 7 112-134,147-169,189-211,231-253,286-308,329-351,361-383
GENEFINDER00000024285 7 112-134,147-169,189-211,231-253,286-308,329-351,361-383
Sequence
Target Sequence 
>C. ELEGANS:181887_AT
gtgattctcatcagtcggaacaccagagatcgcatgtggctcatgtacacgtgctctggt
agaaaaaacaagaatgcaccacaaggaagttatgcacataccgccaagaaatatcatgac
aatgctgtggagggaggcaatgggagacgagcgtcagcgactacaatgttcagtcaggaa
ctctcatccgattcgtctgatgaacgacatgctaggaaactttcgatgatcgttgaagag
ccgtcaagaaaaccgtcgtatgtggaatgtgcgccagtggaacatcaccacgaggtagta
atacatcaagcacaacccgagccagagttttctaagactcccaagcttccgaacgtaatc
agagtccaatcagccgaccacgtggcacgtagtactgtcgactatgatgtctcgagacgt
cggatgtcataccacgacatgccgcaagttggtgacaatcttgccagtctggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATTCTCATCAGTCGGAACACCA 92 485 1192 Antisense
CATGTGGCTCATGTACACGTGCTCT 529 209 1224 Antisense
GGAGACGAGCGTCAGCGACTACAAT 404 517 1334 Antisense
TTCAGTCAGGAACTCTCATCCGATT 219 689 1360 Antisense
GTGCGCCAGTGGAACATCACCACGA 321 479 1460 Antisense
CACAACCCGAGCCAGAGTTTTCTAA 631 193 1502 Antisense
CTCCCAAGCTTCCGAACGTAATCAG 528 231 1529 Antisense
CACGTGGCACGTAGTACTGTCGACT 111 199 1570 Antisense
CGAGACGTCGGATGTCATACCACGA 267 251 1604 Antisense
CATACCACGACATGCCGCAAGTTGG 177 215 1619 Antisense
TGGTGACAATCTTGCCAGTCTGGTC 246 551 1641 Antisense
Sequence Source Affymetrix Proprietary Database