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[181886_at]

Description Y37D8A.8 /REP_DB=WormBase Gene ID /WP=CE21541 /TR=Q9XWU7 /GB=CAA21544.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 44      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 15.2
(3)
A 		7.2
(-0.6)
A 		2
(-3)
A 		4.4
(-1.9)
A 		13
B 7
(-1.7)
A 		23.2
(3)
A 		6.9
(-1.7)
A 		2.3
(-3)
A 		21
C 7.3
(1.2)
A 		3.8
(-2.1)
A 		2.9
(-3)
A 		9.2
(3)
A 		6
avr 9.8
(1.7) 		11.4
(3) 		3.9
(-3) 		5.3
(-1.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 17.1
(-2)
A 		2.9
(-3)
A 		7.6
(-2.7)
A 		3.5
(-3)
A 		32.3
(-1)
A 		91.7
(3)
P 		89
B 3.4
(-2.9)
A 		6.4
(-2.6)
A 		2.7
(-3)
A 		8
(-2.4)
A 		45.5
(2.1)
A 		53.1
(3)
P 		50
C 2.7
(-3)
A 		2.2
(-3)
A 		2.4
(-3)
A 		12.6
(-2.3)
A 		28.5
(-1.1)
A 		85.8
(3)
P 		84
avr 7.7
(-2.7) 		3.8
(-3) 		4.2
(-3) 		8
(-2.7) 		35.4
(-0.4) 		76.9
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 5.5
(3)
A 		1.6
(-1.7)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		5
B 2.2
(-1)
A 		5.7
(3)
A 		1.6
(-1.7)
A 		0.5
(-3)
A 		5
C 2.4
(3)
A 		1.1
(-2.6)
A 		1
(-3)
A 		1.5
(-0.9)
A 		1
avr 3.4
(3) 		2.8
(1.6) 		1
(-2.8) 		0.9
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3.2
(-2.4)
A 		1
(-3)
A 		1.6
(-2.8)
A 		0.9
(-3)
A 		9.7
(-0.5)
A 		22.3
(3)
P 		21
B 1.2
(-2.8)
A 		2.1
(-2.5)
A 		0.6
(-3)
A 		2.1
(-2.5)
A 		18.5
(2.6)
A 		19.8
(3)
P 		19
C 1
(-2.9)
A 		0.7
(-3)
A 		0.6
(-3)
A 		2.5
(-2.6)
A 		9.2
(-1.2)
A 		28.7
(3)
P 		28
avr 1.8
(-2.8) 		1.3
(-2.9) 		0.9
(-3) 		1.8
(-2.8) 		12.5
(0.1) 		23.6
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181886_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6181
Sequence Type Exemplar sequence
Representative Public ID Y37D8A.8 NCBI
Target Description Y37D8A.8 /REP_DB=WormBase Gene ID /WP=CE21541 /TR=Q9XWU7 /GB=CAA21544.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067273(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067273 NCBI Caenorhabditis elegans Y37D8A.8 (Y37D8A.8) mRNA, complete cds. 11/11 None
SNAP00000028775 ENSEMBL cdna:SNAP chromosome:CEL140:III:12864843:12867367:1 11/11 None
GENEFINDER00000028811 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12866857:12867367:1 11/11 None
Y37D8A.8 ENSEMBL cdna:known chromosome:CEL140:III:12866942:12867367:1 gene:Y37D8A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12866937-12867363(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37D8A.8
Entrez Gene 189616 Entrez gene
SwissProt Q9XWU7 EMBL-EBI
WormBase CE21541 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21544 Hypothetical protein Y37D8A.8 [Caenorhabditis elegans] ref|NP_499674.1| Y37D8A.8 [Caenorhabditis elegans] 4.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499674.1 1 35-57
Y37D8A.8 1 35-57
SNAP00000028775 1 74-96
GENEFINDER00000028811 1 48-70
Sequence
Target Sequence 
>C. ELEGANS:181886_AT
gtattacgagaaagttgctccatcattcaaaccctaccaggaatattgtccaagatgcag
atgtaccgttgtgacagttgtcgaatacgaaatgggatgtttcgcttggcttattatcat
attgattatcttcgtcgcctttttcctcatctacatcctttgttgcattgatatccgtga
cgcaattcatcattgtccgaactgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTACGAGAAAGTTGCTCCATCA 519 451 15 Antisense
CTCCATCATTCAAACCCTACCAGGA 391 235 32 Antisense
AACCCTACCAGGAATATTGTCCAAG 95 145 44 Antisense
ATTGTCCAAGATGCAGATGTACCGT 364 5 59 Antisense
GATGTACCGTTGTGACAGTTGTCGA 61 409 74 Antisense
AATGGGATGTTTCGCTTGGCTTATT 541 161 105 Antisense
TATCATATTGATTATCTTCGTCGCC 692 659 129 Antisense
CCTCATCTACATCCTTTGTTGCATT 145 269 159 Antisense
TTTGTTGCATTGATATCCGTGACGC 339 667 173 Antisense
ATATCCGTGACGCAATTCATCATTG 196 21 185 Antisense
CAATTCATCATTGTCCGAACTGTGG 427 179 197 Antisense
Sequence Source Affymetrix Proprietary Database