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[181884_at]

Description H25K10.6 /REP_DB=WormBase Gene ID /WP=CE19938 /TR=Q9XU16 /GB=CAB07233.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 1.2
(-3)
A 		2.5
(-1.8)
A 		2.6
(-1.7)
A 		7.6
(3)
A 		6
B 1.1
(-3)
A 		28.1
(3)
A 		1.4
(-2.9)
A 		1.6
(-2.9)
A 		27
C 1.8
(-2.3)
A 		4.7
(0.5)
A 		1.1
(-3)
A 		7.3
(3)
A 		6
avr 1.4
(-3) 		11.8
(3) 		1.7
(-2.8) 		5.5
(-0.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3
(-0.3)
A 		3.2
(0.1)
A 		1.6
(-3)
A 		3.5
(0.7)
A 		4.7
(3)
A 		2.6
(-1.1)
A 		3
B 5
(-1.8)
A 		3.6
(-2.3)
A 		16.4
(3)
A 		2.5
(-2.8)
A 		2
(-3)
A 		2.1
(-3)
A 		14
C 1.4
(-2.4)
A 		4
(3)
A 		1.9
(-1.3)
A 		3.1
(1.1)
A 		1.1
(-3)
A 		2.2
(-0.7)
A 		3
avr 3.1
(-1.9) 		3.6
(-1.2) 		6.6
(3) 		3
(-2) 		2.6
(-2.6) 		2.3
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.4
(-3)
A 		0.5
(-2.1)
A 		0.7
(-0.4)
A 		1.1
(3)
A 		1
B 0.3
(-3)
A 		6.9
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		7
C 0.6
(-1.8)
A 		1.4
(3)
A 		0.4
(-3)
A 		1.2
(1.8)
A 		1
avr 0.4
(-3) 		2.9
(3) 		0.5
(-2.8) 		0.9
(-1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.6
(-1.8)
A 		1.1
(1.2)
A 		0.4
(-3)
A 		0.9
(0)
A 		1.4
(3)
A 		0.6
(-1.8)
A 		1
B 1.7
(-1.1)
A 		1.2
(-1.9)
A 		4
(3)
A 		0.6
(-3)
A 		0.8
(-2.6)
A 		0.8
(-2.6)
A 		3
C 0.5
(-2.3)
A 		1.2
(3)
A 		0.5
(-2.3)
A 		0.6
(-1.5)
A 		0.4
(-3)
A 		0.7
(-0.8)
A 		1
avr 0.9
(-1.7) 		1.2
(0.3) 		1.6
(3) 		0.7
(-3) 		0.9
(-1.7) 		0.7
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181884_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8995
Sequence Type Exemplar sequence
Representative Public ID H25K10.6 NCBI
Target Description H25K10.6 /REP_DB=WormBase Gene ID /WP=CE19938 /TR=Q9XU16 /GB=CAB07233.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070524 NCBI Caenorhabditis elegans H25K10.6 (H25K10.6) mRNA, complete cds. 11/11 None
GENEFINDER00000037540 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16234287:16236516:1 11/11 None
H25K10.6 ENSEMBL cdna:known chromosome:CEL140:IV:16234287:16236516:1 gene:H25K10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037537 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16234292-16236522(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H25K10.6
Entrez Gene 186782 Entrez gene
SwissProt Q9XU16 EMBL-EBI
WormBase CE19938 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07233 Hypothetical protein H25K10.6 [Caenorhabditis elegans] ref|NP_502925.1| H25K10.6 [Caenorhabditis elegans] 0.0
blast CAA19491 Hypothetical protein Y37A1B.8 [Caenorhabditis elegans] ref|NP_502688.1| Y37A1B.8 [Caenorhabditis elegans] 1.0E-95
blast CAA90668 Hypothetical protein T05A6.4 [Caenorhabditis elegans] ref|NP_495643.1| T05A6.4 [Caenorhabditis elegans] 9.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 9.5E-19
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.1E-25
Sequence
Target Sequence 
>C. ELEGANS:181884_AT
gacctattgggcaatcctcgaactataaacattgaaaacttacatccggacttttgtcta
actttcggagaagttatatacttcctggaaaatgatatatccttccaaaatctccatgca
gagttttgtgaagaggatgatgttctaccgattcacggacggatatgcaagctgaccaca
tttgaagctcttccgaacaattgtagactgattcttggtgatttgattcttcaaggtggc
gatgaaaaatattccgttaaatttacaaaattaagatttttattcggagctttggtaatc
aacggaaccagtttggaaaatcttgattttttgaataatctacaatatattacctcactg
gttgatgaacgagtgattcaaattttatcaaacgattatttgaagtctgcatatttccca
aatctgagaaatataatttctcgaagaagctaccgcgaagtgatagttcacaaaaatcca
ctgctatctcttccttactactatccatttaaaatgtattatactacaaatgctgcgttc
attggagattactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCTATTGGGCAATCCTCGAACTA 613 383 943 Antisense
ACATTGAAAACTTACATCCGGACTT 598 99 971 Antisense
GGATGATGTTCTACCGATTCACGGA 8 515 1077 Antisense
ACGGACGGATATGCAAGCTGACCAC 89 97 1097 Antisense
GCTGACCACATTTGAAGCTCTTCCG 671 295 1113 Antisense
GAAGCTCTTCCGAACAATTGTAGAC 636 341 1126 Antisense
GAAGTCTGCATATTTCCCAAATCTG 537 335 1344 Antisense
GAAGCTACCGCGAAGTGATAGTTCA 133 343 1388 Antisense
ACAAAAATCCACTGCTATCTCTTCC 703 111 1412 Antisense
CTCTTCCTTACTACTATCCATTTAA 648 229 1430 Antisense
TGCTGCGTTCATTGGAGATTACTAT 643 581 1473 Antisense
Sequence Source Affymetrix Proprietary Database